PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180947_P01
Common NameLOC103647828, Zm.53881
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 205aa    MW: 21814.4 Da    PI: 6.2373
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180947_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.82.9e-5721116297
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        reqdrflPianvsrimkk+lPanakiskd ketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+k+rel
  GRMZM2G180947_P01  21 REQDRFLPIANVSRIMKKALPANAKISKDGKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKLYLHKFREL 112
                        89****************************************************************************************** PP

              NF-YB  94 egek 97 
                        eg+k
  GRMZM2G180947_P01 113 EGDK 116
                        **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-5318124IPR009072Histone-fold
SuperFamilySSF471131.86E-3923126IPR009072Histone-fold
PfamPF008081.7E-262690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.1E-215472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.1E-217391No hitNo description
PRINTSPR006158.1E-2192110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MPDSDNDESG GPSNADFSSP REQDRFLPIA NVSRIMKKAL PANAKISKDG KETVQECVSE  60
FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEDYVE PLKLYLHKFR ELEGDKAAAG  120
SQPPPPPSST HNGAGVPVGY GMYGAGGGSG MIMMMGQPMY PPAASSGYSQ QPPHHQMSMG  180
GKGGAYGHCD GSSSSPSGLR RHDGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-4919111597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679001e-176endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180947
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180947_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0178301e-174BT017830.1 Zea mays clone EL01N0508H10.c mRNA sequence.
GenBankEU9563831e-174EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670554.11e-151nuclear transcription factor Y subunit B-10
SwissprotQ75IZ75e-74NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1D6F1221e-150A0A1D6F122_MAIZE; Nuclear transcription factor Y subunit B-2
STRINGGRMZM2G180947_P011e-150(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-70nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]