PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G181254_P01
Common NameLOC100191575
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 418aa    MW: 46826.1 Da    PI: 7.0731
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G181254_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.62.3e-18162261198
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f k+l++ dv ++ r+ l ++++  +     +g+  + ++++++d+sg+sW++  +y  + s+++ lt+GW +F+ka++L +gD +vF+  +
  GRMZM2G181254_P01 162 FTKELSQTDVYARFRIPLDNEHVLPIpmvdtDGV--QRQDVVMRDTSGKSWRFSKTYsVNPSKQHSLTTGWLDFAKAKRLAAGDKIVFM--R 249
                        8899999999999888777777666676655566..4558***************995444555*************************..6 PP

                        SSEE..EEEEE- CS
                 B3  87 rsefelvvkvfr 98 
                        r ++ l v+v+r
  GRMZM2G181254_P01 250 RPNGDLIVGVRR 261
                        799999***998 PP
2Auxin_resp41.27.1e-15287356168
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafeted.sserrl.sGtvvgvsd 68 
                        a++ a+ + +F+v+Y Pr+++ eF+v++++v +al +++ +G  ++m++ +++  + + +  G v ++++
  GRMZM2G181254_P01 287 AVRLAAAGRPFTVTYFPRQAAVEFIVPRSEVDDALATSWEPGALVRMEVMEDEnRQYTMWvVGRVEAIRQ 356
                        5778999****************************************97444404444446666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-20154261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-18158265IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-15160261No hitNo description
PROSITE profilePS5086312.012162263IPR003340B3 DNA binding domain
SMARTSM010196.5E-8162263IPR003340B3 DNA binding domain
PfamPF023621.9E-13162261IPR003340B3 DNA binding domain
PfamPF065078.3E-11287359IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MYNVYMYPSL LIFRPEQHSP PPSLPPSLPL SASPNPGTQK TMATQQPLPP ADCVGDNTVD  60
RDVWLACAAP FSRIPTVGDE VDYFPDGHIE QHLSAAPQPL PAQHRFHCTV TDVSLGVDDK  120
TDEVFAKISL RPRPGRAAAP PPGPGGSSNS PAPSPPQKLR YFTKELSQTD VYARFRIPLD  180
NEHVLPIPMV DTDGVQRQDV VMRDTSGKSW RFSKTYSVNP SKQHSLTTGW LDFAKAKRLA  240
AGDKIVFMRR PNGDLIVGVR RLDVPRYPLF DFQGPDPDQP AQDVMEAVRL AAAGRPFTVT  300
YFPRQAAVEF IVPRSEVDDA LATSWEPGAL VRMEVMEDEN RQYTMWVVGR VEAIRQNIWR  360
MLEIIWGVPS HPPPLATMRS VNAWQVSRPW PPEGHRRREP HQFGDEAPGT QTQLEARR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-315936951373Auxin response factor 5
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G181254
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G181254_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336980.0BT033698.1 Zea mays full-length cDNA clone ZM_BFc0115K05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130477.10.0uncharacterized protein LOC100191575
TrEMBLK0D9Q40.0K0D9Q4_MAIZE; Auxin response factor (Fragment)
STRINGGRMZM2G181254_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.13e-38auxin response factor 16