PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G301860_P01
Common NameEREB122, LOC100281128, ZEAMMB73_970860
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 191aa    MW: 19587 Da    PI: 10.5644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G301860_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-194998255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr +k +g+WvAeIr+p   +kr r++lg++ tae Aa+a++ a  +l+g
  GRMZM2G301860_P01 49 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAEAAARAYDTAVFCLRG 98
                       7******99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-2748108No hitNo description
Gene3DG3DSA:3.30.730.102.4E-3248107IPR001471AP2/ERF domain
PfamPF008475.0E-124998IPR001471AP2/ERF domain
PROSITE profilePS5103223.90749106IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2349108IPR016177DNA-binding domain
SMARTSM003807.0E-3849112IPR001471AP2/ERF domain
PRINTSPR003674.1E-105061IPR001471AP2/ERF domain
PRINTSPR003674.1E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0007063developmental stageLP.07 seven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MERDATAFCP PPQPAPAPAS HAAVLGAGVA VAVAPAAGNG RGGGGGGKQY RGVRMRKWGK  60
WVAEIREPNK RSRIWLGSYS TAEAAARAYD TAVFCLRGRA ARLNFPDQLD GAQAAAAADS  120
TEGARRNGAG LTAAAIRKKA AEVGARVDAL HCGAGAGLAG GGASPLLLSH RRRPKNPDLN  180
REPTPDTSDD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1840110576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G301860
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G301860_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556820.0EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659247.11e-133ethylene-responsive transcription factor RAP2-1
SwissprotO221749e-41ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLK7W6421e-132K7W642_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G301860_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.15e-32DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]