PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G305582_P01
Common Namecl5418_1, ZEAMMB73_056446
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 359aa    MW: 38002 Da    PI: 7.4979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G305582_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-1094119127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC+ f++ GtC+y  +C+FaHg+
  GRMZM2G305582_P01  94 FKTKLCCKFRA-GTCPYVTNCNFAHGM 119
                        69*********.*************95 PP
2zf-CCCH17.76.3e-06177200326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         + C+ f+    C+yGd+C+F H+
  GRMZM2G305582_P01 177 GRHCKKFYTEEGCPYGDTCTFLHD 200
                        5669*****9*************7 PP
3zf-CCCH43.45.6e-14238263126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt++C+ +  tG+C++G++C+FaHg
  GRMZM2G305582_P01 238 WKTRICNKWEMTGYCPFGSKCHFAHG 263
                        8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-891124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-1491126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.02893120IPR000571Zinc finger, CCCH-type
SMARTSM003560.001493119IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-794119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-8174202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-7174202IPR000571Zinc finger, CCCH-type
SMARTSM003560.54174201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.178174202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-17233267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-10234268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629237265IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-9237264IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-11238263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDAWA NAASAAGADA SIWATEDDYR QWSAEPGYGD RNPSSRAGSE  60
QPPPGKKARG GGGGSDSGGG GSTSKSRAIG KMFFKTKLCC KFRAGTCPYV TNCNFAHGME  120
ELRKPPPNWQ EIVAAHEEAT EQREEHQIPI MTSGSVVAGD GGGGSGGGSQ GGRAFKGRHC  180
KKFYTEEGCP YGDTCTFLHD EQSKARESVA ISLSPTVGGG GYNAASANGV MVQKPSNWKT  240
RICNKWEMTG YCPFGSKCHF AHGSTELHKY GGGLVDIDGR DILSTPDSKQ AGGSAKAPLE  300
SAAASTALPP HADVYHLGIQ SQRSAIASQR SGQLQRPIQK WKGPDKISRI YGDWIDENE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.175660.0ear| endosperm| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G305582
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G305582_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354040.0BT035404.1 Zea mays full-length cDNA clone ZM_BFb0059F20 mRNA, complete cds.
GenBankBT0678900.0BT067890.1 Zea mays full-length cDNA clone ZM_BFc0191K02 mRNA, complete cds.
GenBankEU9640070.0EU964007.1 Zea mays clone 275074 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131826.10.0uncharacterized LOC100193200
RefseqXP_008661405.10.0uncharacterized protein LOC100193200 isoform X2
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3L6GEM30.0A0A3L6GEM3_MAIZE; Zinc finger CCCH domain-containing protein 56
TrEMBLB4FE660.0B4FE66_MAIZE; Zinc finger C-x8-C-x5-C-x3-H type family protein
TrEMBLK0DCN00.0K0DCN0_MAIZE; C3H31 transcription factor (Fragment)
STRINGGRMZM2G305582_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.14e-97C3H family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]