PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G306935_P01
Common Namegpm18
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 349aa    MW: 39119.5 Da    PI: 7.2471
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G306935_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.6e-0688113126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y +  C +f+  G C +G+ CkF H+
  GRMZM2G306935_P01  88 YQRNVCFDFLNKGKCERGPECKFVHS 113
                        667788899999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.435782IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-56083IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-56085IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8126083IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-487114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-687115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-688114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.12688115IPR000571Zinc finger, CCCH-type
PfamPF046773.4E-34128243IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541971.08E-8134217IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.107.1E-6135207IPR011146HIT-like domain
PfamPF046761.3E-16268346IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSSADINAKP PNATLSPYVG SAKSVPIEEA PKRAAENIDS QYWRYDVKRQ RHGEAGGGGL  60
CFKFVSSGSC QRGSRCSYRH DEEAVEHYQR NVCFDFLNKG KCERGPECKF VHSLSGETAL  120
RDARPPSERR RVESSCWFCL SSPDVESHLV ISIGEGYYCT LAKGPLVPNH VLMIPVEHCP  180
STLMMPPEAE AELGRYKIAL SKYFEKQGKT AVYFEWVSPR SHHANLQAVP VPLSKADAVN  240
KIFHLAAKKL GFEFSMVNPD GAKTARESLM SQCESKSGLF YVELPEGRIL LHMVDSNEKF  300
PVQFGREVLA GLLSMADRAD WRNCKISKEE EIKLVDDFKQ GFREFDPAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U3e-12136346675887CWF19-like protein 2
6id1_U3e-12136346675887CWF19-like protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.237650.0meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G306935
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G306935_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665610.0BT066561.1 Zea mays full-length cDNA clone ZM_BFb0021F11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169334.10.0uncharacterized LOC100383201
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A1D6I3690.0A0A1D6I369_MAIZE; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A3L6DZX80.0A0A3L6DZX8_MAIZE; Zinc finger CCCH domain-containing protein 59
TrEMBLC0PE420.0C0PE42_MAIZE; Uncharacterized protein
STRINGGRMZM2G306935_P020.0(Zea mays)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]