PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G307402_P01
Common NameZm.26210
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 246aa    MW: 26308.5 Da    PI: 8.0753
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G307402_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025150172123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cg +F++   L  H+r+H
  GRMZM2G307402_P01 150 HECSSCGSVFTSGQALGGHMRRH 172
                        78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.1998120IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-998121IPR007087Zinc finger, C2H2
PROSITE profilePS501579.68198125IPR007087Zinc finger, C2H2
SuperFamilySSF576677.4E-798172No hitNo description
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
PfamPF139124.4E-11149173IPR007087Zinc finger, C2H2
SMARTSM003550.11150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91150172IPR007087Zinc finger, C2H2
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSSVPDCSDA IVPNSKRRRH RSPPAASSSS SHSSSTTQKE ELEDEEEDMA KCLILLAQGP  60
AAIEAARVMP APRSRPKSTG SRRFLAAAEA RGGVCVSYEC KTCNRCFPSF QALGGHRTSH  120
NKHPRRPAEE VLAAMAITTT LSLAATRPAH ECSSCGSVFT SGQALGGHMR RHRPLTTTSS  180
SPATGTEDQQ DSSSKLLQES RINLELDLNL LPSTEQEVTS PPPKPPCHAP AAASPIDHIQ  240
GCCQFR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.262100.0pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G307402
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G307402_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395390.11e-178zinc finger protein ZAT5
TrEMBLA0A1D6LLS71e-177A0A1D6LLS7_MAIZE; C2H2-type zinc finger family protein
TrEMBLA0A3L6EFV11e-177A0A3L6EFV1_MAIZE; Zinc finger protein ZAT5
STRINGGRMZM2G307402_P011e-178(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-30C2H2 family protein