PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G311059_P01
Common NameLOC541747, ZEAMMB73_789348, Zm.13880
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 188aa    MW: 20693.7 Da    PI: 12.2974
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G311059_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.62.2e-112974146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       +g WT+eEd  l++ v  +G+++W++I ++  + Rt+k+c++rw +
  GRMZM2G311059_P01 29 KGHWTAEEDAVLLRHVLVHGPRDWSSIRSKGFLPRTGKSCRLRWVN 74
                       789***********************97763367**********87 PP
2Myb_DNA-binding42.61.4e-1385125345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++++eE+   +++ +q+G++ W++I+ +++ gRt++++k++w 
  GRMZM2G311059_P01  85 KFSAEEERVVLELQAQFGNK-WARISTYLP-GRTDNDVKNFWS 125
                        79******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.3232480IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-192577IPR009057Homeodomain-like
SuperFamilySSF466891.65E-2727124IPR009057Homeodomain-like
SMARTSM007175.1E-102878IPR001005SANT/Myb domain
CDDcd001671.12E-103276No hitNo description
PfamPF139212.4E-113282No hitNo description
Gene3DG3DSA:1.10.10.603.7E-1878130IPR009057Homeodomain-like
PROSITE profilePS5129416.9781132IPR017930Myb domain
SMARTSM007171.3E-1182130IPR001005SANT/Myb domain
PfamPF002497.3E-1285125IPR001005SANT/Myb domain
CDDcd001675.02E-1085124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MARAPGGARR RGGGSGRRGQ ADGGQAVRKG HWTAEEDAVL LRHVLVHGPR DWSSIRSKGF  60
LPRTGKSCRL RWVNKLRPDL KTGCKFSAEE ERVVLELQAQ FGNKWARIST YLPGRTDNDV  120
KNFWSTRQKR IARLLGTPPR GRSSRSRSRS AKGKAPVVAS SLESRPATVV KPLHVAAHIA  180
RSSLSGTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-242713025126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G311059
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G311059_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0994159e-67AF099415.1 Zea mays clone ZmMYBIP102 R2R3MYB-domain protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401111.11e-117probable transcription factor MYB58
SwissprotQ0JB898e-69MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A1D6JD851e-116A0A1D6JD85_MAIZE; Putative MYB DNA-binding domain superfamily protein
TrEMBLA0A3L6G9F61e-116A0A3L6G9F6_MAIZE; Transcription factor GAMYB
STRINGGRMZM2G311059_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.19e-62MYB family protein
Publications ? help Back to Top
  1. Rabinowicz PD,Braun EL,Wolfe AD,Bowen B,Grotewold E
    Maize R2R3 Myb genes: Sequence analysis reveals amplification in the higher plants.
    Genetics, 1999. 153(1): p. 427-44
    [PMID:10471724]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]