PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G312201_P01
Common NameZm.10304
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 1467aa    MW: 163164 Da    PI: 7.3777
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G312201_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.32.2e-51211481128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yL++kv+++++++  +i+evd+yk++PwdLp+k+  ++kewyfF++rd+ky++g+r+nr++ +gyWkatg dk++
  GRMZM2G312201_P01  21 LPPGFRFHPTDEELVVYYLCRKVARQQVPV-PIIAEVDLYKFDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRTAGKGYWKATGADKSI 111
                        79****************************.88***************8877899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +   ++++ g+kk Lvfy+g+ap+g+ktdW+mheyr+
  GRMZM2G312201_P01 112 VPMgSTRAAGIKKALVFYSGKAPRGVKTDWIMHEYRV 148
                        99866778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6117174IPR003441NAC domain
PROSITE profilePS5100560.34121174IPR003441NAC domain
PfamPF023656.1E-2622148IPR003441NAC domain
PROSITE profilePS513755.437444474IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.829478512IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.917513543IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.8E-4515545IPR002885Pentatricopeptide repeat
PfamPF015350.002517544IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.659544574IPR002885Pentatricopeptide repeat
PfamPF015352.9E-4546575IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.6E-4546576IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.797575609IPR002885Pentatricopeptide repeat
PfamPF015350.0042577606IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.1E-6577611IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.506645675IPR002885Pentatricopeptide repeat
PfamPF015350.003650675IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.43677711IPR002885Pentatricopeptide repeat
PfamPF130413.4E-12677724IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.4E-8679712IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.75712747IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.831748778IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.93780814IPR002885Pentatricopeptide repeat
PfamPF130411.5E-7903952IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.183904938IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.003907939IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.884939973IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.1919741004IPR002885Pentatricopeptide repeat
PfamPF130415.0E-810041051IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.86310051039IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.3E-610071040IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.48910401074IPR002885Pentatricopeptide repeat
PfamPF128541.9E-510751103IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.28210751109IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-510801106IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.0E-810841281IPR011990Tetratricopeptide-like helical domain
PfamPF015357.3E-411081136IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.002311081135IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.33811111136IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.70711371171IPR002885Pentatricopeptide repeat
PfamPF015356.1E-511391167IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.4E-711391173IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.20211721206IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.30612071237IPR002885Pentatricopeptide repeat
PfamPF015351.3E-412121237IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.0E-412121238IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.27912381272IPR002885Pentatricopeptide repeat
PfamPF015351.1E-412411269IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.6E-512411274IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.45612731303IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.62113091339IPR002885Pentatricopeptide repeat
PfamPF015350.113131336IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.0E-813171396IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.33813411371IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1467 aa     Download sequence    Send to blast
MAMVAAAEGS GRRDAEAELN LPPGFRFHPT DEELVVYYLC RKVARQQVPV PIIAEVDLYK  60
FDPWDLPEKA LFGRKEWYFF TPRDRKYPNG SRPNRTAGKG YWKATGADKS IVPMGSTRAA  120
GIKKALVFYS GKAPRGVKTD WIMHEYRVAQ ADHTLGKKGS QKLDEWVLCR LYNKRNNWDK  180
VKVEEQELEA APRRQHHLQS AEDSMSNSFQ THDSDIDNVF ELQNCYGNNM VQGQAMTPRN  240
DIGVVTVKED NDWFTDMNLD DLQASYNMAH TTNHSTVTFQ SFFLKLHPFC PHRTTGDAHV  300
RAAGQCGPIL HGLNLGSHEP SAPHSVTHQP PLRDEVSRVT QTAVLRLASG DLRPPSPAAV  360
LCHGPWTVVR QQQGSSLCPT ACPPPASATS ASGLWAPVSR LCPRRSSSGL RHQALSYSST  420
APVPATARSS TPPSRTALKV FDQSPAPWRA FLKAYSHGPF PLEALHLFKH ARQHLADDTF  480
VFTFVLKACA GLGWHRAGAQ LHALVVQKGF EFHAYVHTAL INVYVMSRCL VEARKVFDEM  540
PVKNVVSWNV MITGFAGWGE VEYARLLFDQ MPCRNVVSWT GLIDGYTRAC LYAEALTLLR  600
HMMAGGISPS EITVLAVIPA ISNLGGILMG EMLNGYCEKK GIMSDARVGN SLIDLYAKIG  660
SVQNSLKVFD EMLDRRNLVS WTSIISGFAM HGLSVEALEL FAEMRRAGIK PNRITFLSVI  720
NACSHGGLVE QGLAFFKSMV YEYNIDPEIK HFGCIIDMLG RAGRLCEAEQ IIEGLPMEVN  780
VTVWRILLGC CSKYGEVAMG ERAIKMISDL ERESGGDFAV LSNVLTELGR FSDAEQARKL  840
LDQRKIVKLQ EAVMEAVKKL HAHLVVSGLH NCQYAMSKVI RLYALHQSDL VSAHKVFKQI  900
ESPTTFLWNT LLRGLAQSDA PKDAIVFYKK AQEKGMKPDN LTFPFVLKAC AKTCAPKEGE  960
QMHNHVIKLG FLLDIFVSNS LIYLYAACGA LACARSVFNE MLVKDVVSWN SLIGGYSQHN  1020
RLKEVLTLFK LMQAEEVQAD KVTMVKVISA CTHLGDWSMA DCMVRYIEHN HIEVDVYLGN  1080
TLIDYYCRIG QLQSAEKVFS QMKDKNTVTL NAMITAYAKG GNLVSAKKIF DQIPNKDLIS  1140
WSSMICAYSQ ASHFSDSLEL FRQMQRAKVK PDAVVIASVL SACAHLGALD LGKWIHDYVR  1200
RNNIKADTIM ENSLIDMFAK CGCVQEALQV FTDMEEKDTL SWNSIILGLA NNGFEDEALD  1260
IFHSMLTEGP RPNEVTFLGV LIACANRQLV EEGLDHFERM KSVHNLEPQM KHYGCVVDIL  1320
SRAGQLEKAV SFISEMPLAP DPVVWRILLG ACRTHGNVAV AEMATKKLSE LDPGNSADSM  1380
LLSNIYASAD RWSDAMNVRR WTADNAVGES ELVPDRDDSV LELGIVRKLT TSCAKAGRSI  1440
SLALEAFPCD IQEQLNRFMD GRIDGIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-89131807174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.103040.0cell culture| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G312201
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G312201_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2835370.0KP283537.1 Zea mays NAC protein (Zma29150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311997.10.0pentatricopeptide repeat-containing protein At2g22410, mitochondrial
TrEMBLA0A1D6N8W30.0A0A1D6N8W3_MAIZE; Pentatricopeptide repeat-containing protein mitochondrial
STRINGGRMZM2G312201_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-78NAC domain containing protein 32