PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G315515_P01
Common NameC3H8, ZEAMMB73_337051
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 215aa    MW: 23290.4 Da    PI: 8.9359
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G315515_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-084570127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       +kt+lC+ f +  tC+y  +C+FaHg+
  GRMZM2G315515_P01 45 FKTKLCCKFWA-RTCPYVTNCNFAHGM 70
                       58888888888.8************95 PP
2zf-CCCH19.12.3e-06120145126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yk + C+ f+    C+yGd+C+F H+
  GRMZM2G315515_P01 120 YKGRHCKKFYTEEGCPYGDTCTFLHD 145
                        78888********************7 PP
3zf-CCCH44.42.8e-14183208126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt++C+ +  tG+C++G++C+FaHg
  GRMZM2G315515_P01 183 WKTRICNKWEMTGYCPFGSKCHFAHG 208
                        8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-113875IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-64274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.6524471IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-54570IPR000571Zinc finger, CCCH-type
SMARTSM003560.64670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-7119147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-9119147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573119147IPR000571Zinc finger, CCCH-type
SMARTSM003560.35119146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-15178208IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9180209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629182210IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-9182209IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-11183208IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0009066anatomyanther
PO:0001007developmental stagepollen development stage
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MTGTPPRGRG ASSRCLVRRL TAGAAAAMVA AGAAQASQRH RKMFFKTKLC CKFWARTCPY  60
VTNCNFAHGM EELCKPPPNW QEIVATHEDA TTKQGEEHQI PIMTSRSVIA GDDGGGGRAY  120
KGRHCKKFYT EEGCPYGDTC TFLHDEQSKA RESVAISLLP TIGGGGYNAA SASGSMAQNS  180
SNWKTRICNK WEMTGYCPFG SKCHFAHGST VIPNL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.175663e-98ear| endosperm| leaf| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G315515
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G315515_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280380.0KJ728038.1 Zea mays clone pUT6183 C3H transcription factor (C3H8) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357899.11e-162zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ32e-81C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLK7UB911e-161K7UB91_MAIZE; C3H transcription factor
STRINGGRMZM2G315515_P011e-161(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-62C3H family protein