PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G316758_P01
Common NameZEAMMB73_063302, Zm.135083
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 230aa    MW: 24390.9 Da    PI: 6.8994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G316758_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-091411801155
                        HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  GRMZM2G316758_P01 141 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 180
                        6******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.637130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.2E-8140185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-13140190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-13140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6141180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-10142184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQGGGGGGGQ DDFLDQMLST LPPAWPDLGY GKSSPWELPA GPDAAAAAAA AFDETALLAS  60
RLRHHQIGGV DEKPLMLHLS DLHGVAAGGG DDAGFMPLPL FTDRAAFKSP NAAGADQALY  120
NGFGAAGMHA AAVHQPPFGQ LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ  180
LQVKVLSMSR LGGAAAVGPL VASMASERHQ RPRLIQLKLR GPNMMLNPYF
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G316758
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G316758_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9583670.0EU958367.1 Zea mays clone 1687270 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679227.11e-116transcription factor bHLH66
TrEMBLA0A1D6QC991e-144A0A1D6QC99_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G316758_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-27LJRHL1-like 1