PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G316840_P01
Common NameLOC100382216
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 211aa    MW: 22834.1 Da    PI: 4.748
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G316840_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.7e-33101311128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGf+F P+deelvv++L++k++  +++  +++++v +++++Pw+L+ k+ +  ++wyfFs+++        ++rat +gyW++   d++v
  GRMZM2G316840_P01  10 LPPGFHFFPSDEELVVHFLRRKASLLPCQP-DIVPTVCMNHHDPWELNGKALEAGSQWYFFSHAK--------QSRATPNGYWSSVCADETV 92 
                        79*************************999.89**************966667789******974........5799*************** PP

                NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ls     + +vglkktLvf +g+ ++g +t+W+mhey+l
  GRMZM2G316840_P01  93 LSGgggCSVVVGLKKTLVFSTGEPSDGAETNWIMHEYHL 131
                        **86666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-427171IPR003441NAC domain
PROSITE profilePS5100539.5110173IPR003441NAC domain
PfamPF023656.8E-2311131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGGASDSNLL PPGFHFFPSD EELVVHFLRR KASLLPCQPD IVPTVCMNHH DPWELNGKAL  60
EAGSQWYFFS HAKQSRATPN GYWSSVCADE TVLSGGGGCS VVVGLKKTLV FSTGEPSDGA  120
ETNWIMHEYH LLDGRTGGSS SSSSASSIHS SSKKSHHPNT EFSNWVICRV FDSTGGGSQA  180
NCHDDEGMEL SCLDELFLSL DDYDEVSLSS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-301017320168NAC domain-containing protein 19
3swm_B8e-301017320168NAC domain-containing protein 19
3swm_C8e-301017320168NAC domain-containing protein 19
3swm_D8e-301017320168NAC domain-containing protein 19
3swp_A8e-301017320168NAC domain-containing protein 19
3swp_B8e-301017320168NAC domain-containing protein 19
3swp_C8e-301017320168NAC domain-containing protein 19
3swp_D8e-301017320168NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G316840
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G316840_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0635570.0BT063557.1 Zea mays full-length cDNA clone ZM_BFc0077D21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008668325.11e-155putative NAC domain transcription factor superfamily protein isoform X1
SwissprotQ8GWK63e-60NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1D6EA941e-154A0A1D6EA94_MAIZE; NAC domain-containing protein 104
STRINGGRMZM2G316840_P011e-154(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Representative plantOGRP45101024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-56xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]