PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G320827_P01
Common NameTHX32, Zm.22695
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 208aa    MW: 22949.2 Da    PI: 11.6158
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G320827_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix316.6e-102181165
           trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
                       +Wt +e+laL +a++ +  +++r+ l  ++W++v+++      ++++ qC++k+e+l++r +  +
  GRMZM2G320827_P01 21 CWTTDETLALARAYTARRLAVGREHLTSTDWAAVAAAAP----SKTARQCRHKIEKLRRRLRSNR 81
                       8*********************************99865....689************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-72083No hitNo description
PROSITE profilePS500906.3652274IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-42275IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MASPSPSSPA RASGRRVPPP CWTTDETLAL ARAYTARRLA VGREHLTSTD WAAVAAAAPS  60
KTARQCRHKI EKLRRRLRSN RRRPCPLLDA MDLLDGPSPP FFSKSQSRST SLSSSPPPPA  120
AVSTPSPPSP PASPPRKRRR DDAWDEDGVS DVVGALRAIG EGFLRAEERR MEAARETQRM  180
RMEMALRHLD AQRRLMDALV GRIIDALD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17177KLRRRLR
27278LRRRLRS
3135139RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1243670.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G320827
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G320827_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9686650.0EU968665.1 Zea mays clone 323209 hypothetical protein mRNA, complete cds.
GenBankKJ7279470.0KJ727947.1 Zea mays clone pUT6045 trihelix transcription factor (THX32) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144478.11e-144uncharacterized protein LOC100277445
TrEMBLB6TUK01e-142B6TUK0_MAIZE; FRIGIDA interacting protein 2
STRINGGRMZM2G320827_P011e-143(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139112024
Representative plantOGRP1317245
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]