PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G322090_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 587aa    MW: 63520.8 Da    PI: 6.2264
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G322090_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.81.4e-15458498242
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        ++k+C+CkkskClk+YCeCfaag++Cse C+C +C+N++++
  GRMZM2G322090_P02 458 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCIGCQNNQSH 498
                        689**********************************9975 PP
2TCR51.91.5e-16543582140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN  
  GRMZM2G322090_P02 543 RHKRGCNCKKSSCLKKYCECFQGGVGCSVSCRCEGCKNAF 582
                        589***********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.1E-18457498IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.044458583IPR005172CRC domain
PfamPF036388.3E-12460495IPR005172CRC domain
SMARTSM011146.1E-17543584IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.2E-12545581IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDTPDRPRAA AAAGFEDSPV FNFINNLSPI PPPKPLDSAH NVQLFKSSDL APVSSIFASP  60
HVNPVKETKV LIRDESVHLP QELHSPSSVR TRIDTSGSFR MIRCKDIVSD NCNITCQLNE  120
ASIDSSDHTS NSTGQLTQSI QDAAGSMESD KDQCDANKTD LTISQECTGL EGMNLDESGP  180
DKMDSSHSGI VVHENQLSEQ NNDEPAAYNE GYIITHQSTS DMLTLAIPSG TETQPVNDTQ  240
MADNPYSCES LLDDQSSGYC TQNSVHEPHL YWTGAVEGSA VSYTPQTLPG ALQSQLMPCN  300
KLSEPKDYVP TEQNALSQHL RGMRRRSLFN EKAGISNKGV DKTSDHHPVN STTPKCKTIS  360
GDNSKPLRTP PCALPGIGLH LNALATIPKE KIVPREIQST INESSNLIGP AGSSPAPFEQ  420
NIINDDFTQT TDVATAEASS QGSPKKKRHK FDNGDGTSCK RCSCKKSKCL KLYCECFAAG  480
VYCSEPCSCI GCQNNQSHME TVLSTRQQIE SRNPLAFAPK VIHTSEPGMD LGDFSNKTPA  540
SARHKRGCNC KKSSCLKKYC ECFQGGVGCS VSCRCEGCKN AFGKREG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1646258014120Protein lin-54 homolog
5fd3_B9e-1646258014120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.849990.0aerial organ| cell culture| ear| embryo| endosperm| meristem| pericarp| pollen| sheath| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G322090
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G322090_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9722050.0EU972205.1 Zea mays clone 377413 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349342.10.0uncharacterized protein LOC100384542
TrEMBLA0A1D6KFU90.0A0A1D6KFU9_MAIZE; Protein tesmin/TSO1-like CXC 2
STRINGGRMZM2G322090_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.16e-69Tesmin/TSO1-like CXC domain-containing protein