PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G334225_P02

Common Name

LOC100282219

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

M-type_MADS

Protein Properties

Length: 175aa MW: 20340.4 Da PI: 9.2462

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G334225_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.1	2.3e-28	33	82	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l +s GRMZM2G334225_P02 33 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLSHFS 82 79********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.436	25	85	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.4E-38	25	84	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.65E-35	26	99	No hit	No description
SuperFamily	SSF55455	1.57E-30	26	107	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-26	27	47	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	27	81	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.3E-26	34	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-26	47	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-26	62	83	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MSICIPGSPL QFACNLGGDR LHSIMGRVKL QIKRIENNTN RQVTFSKRRN GLIKKAYELS 60 VLCDIDIALI MFSPSNRLSH FSGRRRIEDV ITRYINLPEH DRGGVVRNRE YLMKMLAKLK 120 CEGNIAEQLT PNKEPINSNV EELQQEIKTY QHQMEVLKEQ LRSDNIDVDE RFRDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-19	25	99	1	74	MEF2 CHIMERA
6byy_B	2e-19	25	99	1	74	MEF2 CHIMERA
6byy_C	2e-19	25	99	1	74	MEF2 CHIMERA
6byy_D	2e-19	25	99	1	74	MEF2 CHIMERA
6bz1_A	2e-19	25	99	1	74	MEF2 CHIMERA
6bz1_B	2e-19	25	99	1	74	MEF2 CHIMERA
6bz1_C	2e-19	25	99	1	74	MEF2 CHIMERA
6bz1_D	2e-19	25	99	1	74	MEF2 CHIMERA
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Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G334225

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G334225_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060896	0.0	BT060896.1 Zea mays full-length cDNA clone ZM_BFb0067L07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001148603.1	6e-95	MADS-box protein AGL66
Swissprot	Q9LM46	1e-52	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A3L6E9M3	1e-112	A0A3L6E9M3_MAIZE; Agamous-like MADS-box protein AGL66
STRING	GRMZM2G334225_P01	1e-115	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	5e-55	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	GRMZM2G334225_P02

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]