PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G339751_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 159aa    MW: 17479.7 Da    PI: 10.1006
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G339751_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.5e-203396357
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC........TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl........gLterqVkvWFqNrRakekk 57
                        R+++tkeq+ +Le l+e   r psae+++++A++l         ++ + V++WFqN+Ra+ ++
  GRMZM2G339751_P01 33 ARWNPTKEQVAVLEGLYEHgLRSPSAEQIQQIADRLrehghghgAIEGKSVFYWFQNHRARLRQ 96
                       6*****************99*****************************************996 PP
2Wus_type_Homeobox94.21.1e-303297364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyG....kiedkNVfyWFQNrkaRerqk 64
                        +RW+Pt+eQ+ +Le ly++Glr+P++e+iq+i+ +L+e+G    +ie+k VfyWFQN++aR rq+
  GRMZM2G339751_P01 32 AARWNPTKEQVAVLEGLYEHGLRSPSAEQIQQIADRLREHGhghgAIEGKSVFYWFQNHRARLRQQ 97
                       68************************************97522227****************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.582897IPR001356Homeobox domain
SuperFamilySSF466893.76E-1430100IPR009057Homeodomain-like
SMARTSM003893.8E-830101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-1032101IPR009057Homeodomain-like
PfamPF000462.0E-173396IPR001356Homeobox domain
CDDcd000863.03E-73498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDMEIPQQQA AHGQDESGPA APPLSPASAA AAARWNPTKE QVAVLEGLYE HGLRSPSAEQ  60
IQQIADRLRE HGHGHGAIEG KSVFYWFQNH RARLRQQRQK QESFAYFTRL LRRPPPLPVL  120
SMPPAPPYRH GRVPSPATIT MPAPPPPTPA ACYNSGGSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.725111e-115cell culture| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G339751
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G339751_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347781e-111AM234778.1 Zea mays partial mRNA for WOX2B protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156690.11e-112WUSCHEL-related homeobox 5 isoform X1
SwissprotA2WWU76e-35WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR866e-35WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLA0A1D6G8N01e-110A0A1D6G8N0_MAIZE; WUSCHEL-related homeobox 2
STRINGGRMZM2G339751_P011e-112(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Representative plantOGRP85821116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.12e-29WUSCHEL related homeobox 2