PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G342424_P01

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bZIP

Protein Properties

Length: 155aa MW: 17135.1 Da PI: 6.5267

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G342424_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.3e-11	65	98	3	36
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 e kr rr+ +NRe+ rrsR+RK+a++ Le vk GRMZM2G342424_P01 65 ETKRIRRMVSNRESTRRSRRRKQAQLSDLESQVK 98 579****************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0083	63	134	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.508	65	98	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.3E-9	65	98	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.89E-8	67	102	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-7	67	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDGGSWWYGN VRTPNPVMSQ AASISASPGL TISANHALES ESDSDSESLY EVEGVPYERG 60 NRSIETKRIR RMVSNRESTR RSRRRKQAQL SDLESQVKMA EDMVARSVVS CDLGDLGLAP 120 YVNSRKMCQA LNVLTGLDLL GSDAFTYGAR PHDTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRSRRRKQ
2	81	86	SRRRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.10293	1e-138	cell culture\| ear\| endosperm\| meristem\| ovary

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G342424

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269\|PubMed:11133985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G342424_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061821	1e-135	BT061821.1 Zea mays full-length cDNA clone ZM_BFb0185P06 mRNA, complete cds.
GenBank	EU966841	1e-135	EU966841.1 Zea mays clone 297691 light-inducible protein CPRF-2 mRNA, complete cds.
GenBank	KJ728165	1e-135	KJ728165.1 Zea mays clone pUT6435 bZIP transcription factor (bZIP17) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001150404.1	5e-73	uncharacterized protein LOC100284034
Refseq	XP_008658673.1	7e-73	light-inducible protein CPRF-2 isoform X1
Swissprot	Q6H500	1e-31	RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBL	A0A1D6GVL6	1e-110	A0A1D6GVL6_MAIZE; Basic leucine zipper 9
STRING	GRMZM2G342424_P01	1e-111	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Link Out ? help Back to Top
Phytozome	GRMZM2G342424_P01

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]