PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G344974_P01
Common NameLOC103627902, Zm.130977
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 184aa    MW: 19549.4 Da    PI: 6.3464
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G344974_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-055476123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ykC+ C + F++   L  H+++H
  GRMZM2G344974_P01 54 YKCTFCRRGFPTAQALGGHMNVH 76
                       9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-65180No hitNo description
Gene3DG3DSA:3.30.160.603.4E-45278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.2E-65478IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5335481IPR007087Zinc finger, C2H2
SMARTSM003550.00615476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MELGLTVDRK KDDEGAPRAS SSSSPSCEAD DDDLPKKQQQ RPSGDDDEGT RQPYKCTFCR  60
RGFPTAQALG GHMNVHRRHR GRPAAVSTGA AAGSSAASVY DYDQPCSTTT TPVLAFARQA  120
TTTQRRPHEL PLFVARGDCC AAGRGSTGTA AGDDVPQDHR YYLPKNGDGG EELDLELRLG  180
GAGP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G344974
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G344974_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718330.0EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394338.11e-132uncharacterized protein LOC103627902
TrEMBLA0A1D6HPU41e-130A0A1D6HPU4_MAIZE; Uncharacterized protein
TrEMBLA0A3L6ETU41e-130A0A3L6ETU4_MAIZE; Zinc finger protein 10
STRINGGRMZM2G344974_P011e-131(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-11zinc-finger protein 10