PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G345155_P01
Common NameLOC100276106, ZEAMMB73_603163, Zm.124778
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 141aa    MW: 15272.2 Da    PI: 7.0435
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G345155_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-053050323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C++Cg+ F ++  L  H++ H
  GRMZM2G345155_P01 30 CTYCGRKFCTSQALGGHQNAH 50
                       ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.87E-62167No hitNo description
PROSITE profilePS5015711.6142855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEREQELDLE LTLLPSAWAT QEEAPGFFLC TYCGRKFCTS QALGGHQNAH KYERALAKRR  60
RDIAAALRKH GVPVTRAGQF HAGASPSARA TAGVAGSERP DAGRERPVAV DELQGAPAPW  120
QSGGLLHQVE RTEELDLSLG L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1247780.0root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G345155
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G345155_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9600650.0EU960065.1 Zea mays clone 221533 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465203.18e-48zinc finger protein 2
TrEMBLA0A3L6DHB91e-97A0A3L6DHB9_MAIZE; Zinc finger protein 2
TrEMBLB6T5001e-97B6T500_MAIZE; Uncharacterized protein
STRINGGRMZM2G345155_P012e-98(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.16e-16C2H2 family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]