PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G350621_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 257aa    MW: 28676.1 Da    PI: 7.9306
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G350621_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05227250123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C+ C+ +Fs++ +++ Hi++ H
  GRMZM2G350621_P01 227 YTCKLCNATFSTQQMYHGHISLlH 250
                        9*******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280229250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEHNSYPTKD ARFRQSDNDI SPLHEVLRGK TTMPTLPSSA PNDHAHSFHN YYDNSEAISH  60
QLHPVFNHVP STSTIAPTGM KQSSKNEQEL MHMFLTTPVS EHARNKVLSM EPQSIESLLQ  120
GNPMAILQAH LDIVGVSDPG SIFHDPTLHI PKDKMHKSFG ASSSSHDGFY GKISYVKPTY  180
FNQPPLSSVV QREQHMPSGF PSGNSYDANK EVMSSTINFG RVQKQKYTCK LCNATFSTQQ  240
MYHGHISLLH NKGMGSN
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G350621
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G350621_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457384.21e-123uncharacterized protein LOC8060818
TrEMBLA0A1W0VW351e-145A0A1W0VW35_SORBI; Uncharacterized protein
STRINGGRMZM2G350621_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1939869
Representative plantOGRP1963722