PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G351232_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 543aa    MW: 61729.1 Da    PI: 8.9667
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G351232_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP49.28.6e-162622924171
            E2F_TDP  41 nkrRRiYDilNVLealnliekkekneirwkg 71 
                         ++RRiYDi+NVLe+++liekk kn+irwkg
  GRMZM2G351232_P01 262 VQKRRIYDITNVLEGIGLIEKKLKNNIRWKG 292
                        59***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013728.8E-9217292IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.1E-15258294IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-10259293IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.4E-13262292IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF563005.6E-43302530IPR029052Metallo-dependent phosphatase-like
Gene3DG3DSA:3.60.21.101.3E-11307361IPR029052Metallo-dependent phosphatase-like
Gene3DG3DSA:3.60.21.102.9E-38363535IPR029052Metallo-dependent phosphatase-like
PfamPF001497.7E-8374461IPR004843Calcineurin-like phosphoesterase domain, apaH type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MHGVTLIPGV PEKDYARARY RYQNLSKLLP LFLTEQSLHE AKADPAKATT NGVPNGTGHS  60
YSGTVPSQQN SALTPDGNYR APLLGGVPSA GYLDTTYGYD STWAQFAWYD GSAYANGQQR  120
TTTTNRFPSS SFSGNGSSAR YQNKSSTTQQ MLHSCFCPLC IVFKQAPTYP NRVYPSPRPY  180
TQYENSVKTG LPYGSNGYDS RIYGRCGLGM DNRYRPRACS GYYGYGNESQ DGTIELNRGP  240
RSGRFKNQKL YGHTVTIDPV MVQKRRIYDI TNVLEGIGLI EKKLKNNIRW KGVDDSRPGE  300
FSDDMSILQM GRVGEKLDID FVISTGDNFY KNGLKGVRDQ AFKELFMDIY IAQSLQKPWY  360
SELVDFFFVD TTPFQLEYWT HPGKHRYDWR GVAPRGKYIA NLLKDMDVAM KRSTARWKIV  420
VGHHTMRSVS EHGDTEELLE LLLPVLKDNG VDFYINGHDH CLEHISSRDS PLQYFTSGGG  480
SKAWRGVFHP NKDKLRFFYD GQGFMSLQLN QDQAHFIFYD VFGNILYRWS SRHPQSSTYL  540
NEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qfc_A2e-1629053015299PROTEIN (PURPLE ACID PHOSPHATASE)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.190330.0cell culture| ear| endosperm| meristem| ovary| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G351232
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G351232_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458720.0EU945872.1 Zea mays clone 288326 mRNA sequence.
GenBankEU9694770.0EU969477.1 Zea mays clone 330784 purple acid phosphatase 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6F0X50.0A0A3L6F0X5_MAIZE; Purple acid phosphatase 17 (Fragment)
STRINGGRMZM2G351232_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.34e-16E2F transcription factor 1