PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G354384_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 171aa    MW: 18430.4 Da    PI: 10.7403
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G354384_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.38.3e-15260259
                       --SS-EEEEEEE--.TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY  2 dDgynWrKYGqKev.kgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                       +Dg++WrKYGqK+  + ++ p    r   ++Cpv+ kv+ +a+d+ v++ +Y g Hnh+
  GRMZM2G354384_P01  2 SDGCQWRKYGQKVAaTRARAPTTAARPGAPDCPVRMKVQLCARDTAVLVAMYDGVHNHP 60
                       8***********86256789**************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081113.689162IPR003657WRKY domain
SMARTSM007747.3E-8161IPR003657WRKY domain
SuperFamilySSF1182901.18E-11261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-13260IPR003657WRKY domain
PfamPF031061.1E-10360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020142anatomystem internode
PO:0001052developmental stagevascular leaf expansion stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSDGCQWRKY GQKVAATRAR APTTAARPGA PDCPVRMKVQ LCARDTAVLV AMYDGVHNHP  60
LTPTPPRRWR RPPYSRRPRH ATRQALLLPP LTALPPAPQR YSFSGAAVAI SGPPTAASSQ  120
YNVVVPMANI MMKAVADPSF RTAVMVAVAS YLGEQCGGRN VDDILTLAPP C
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G354384
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G354384_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008676372.11e-122WRKY transcription factor WRKY28-like
TrEMBLA0A1E5VD972e-47A0A1E5VD97_9POAL; Putative WRKY transcription factor 9
STRINGGRMZM2G354384_P011e-120(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-14WRKY DNA-binding protein 61