PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G357688_P01
Common NameLOC100282331
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 177aa    MW: 18359.6 Da    PI: 7.6707
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G357688_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000454668123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C++C++ F ++  L  H++ H
  GRMZM2G357688_P01 46 FACNYCHRKFCSSQALGGHQNAH 68
                       78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.9284673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MENAPTSHAH GVSLDLRLDP SPLHRSAAVP VPAPPFAADH RPGEAFACNY CHRKFCSSQA  60
LGGHQNAHKL ERTLAKRSRD ILAAPPPSSP PPPAPAVAFH AAAPESNRRS GLVPTAYYGA  120
TRLAREEDAM AQQAAPPGFA MGWGADTAAA ADGGCGRLGL GHGHGQSGEE IDLSLKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1628190.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G357688
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G357688_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9605220.0EU960522.1 Zea mays clone 225835 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148715.11e-125zinc finger protein 2
TrEMBLA0A3L6E0731e-123A0A3L6E073_MAIZE; Zinc finger protein 2
TrEMBLB6T6A71e-123B6T6A7_MAIZE; Zinc finger protein 2
STRINGGRMZM2G357688_P011e-124(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.16e-17zinc finger protein 2
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]