PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G361842_P02
Common NameCA2P8, cl982_-1b
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 159aa    MW: 17086.2 Da    PI: 6.6026
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G361842_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA39.91.4e-12891103758
          CBFB_NFYA  37 pylheSRhkhAlrRpRgsgGrF 58 
                        pylheSRh+hAl+R+Rg gGrF
  GRMZM2G361842_P02  89 PYLHESRHQHALKRARGAGGRF 110
                        8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020457.7E-1123110IPR001289Nuclear transcription factor Y subunit A
SMARTSM005216.7E-462113IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115214.57789113IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MTSVVHSVSG DHRAEDQNQQ KKQAEPGDQQ EAPVTSSDSQ PTVGTPSTDY VAPYAPHDMS  60
HAMGQYAYPN IDPYYGSLYA AAYGGQPLPY LHESRHQHAL KRARGAGGRF LNSKSDDKEE  120
NSDSSHKENQ NGVAPHRSGQ PSTPPSPNGA SSANQGRQS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.272911e-148embryo| meristem| pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G361842
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G361842_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0657640.0BT065764.1 Zea mays full-length cDNA clone ZM_BFc0071M17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679161.11e-113uncharacterized protein LOC100284857 isoform X2
TrEMBLC0PBU51e-111C0PBU5_MAIZE; CCAAT-HAP2 transcription factor
STRINGGRMZM2G361842_P011e-90(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-09nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]