PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G362627_P01
Common NameLOB38, LOC100382144
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 299aa    MW: 31795.7 Da    PI: 7.3427
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G362627_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.63.2e-4171061100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkC+++Cv+apyfp ++p+kfa vh++FGasnv+kll++lp  +reda++sl+yeAear+rdPvyG+v++i+ lq +++q++ 
  GRMZM2G362627_P01   7 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFASVHRIFGASNVSKLLNDLPAVQREDAVNSLAYEAEARIRDPVYGCVSHISVLQVRIRQVRD 98 
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        el+++++e
  GRMZM2G362627_P01  99 ELVAARKE 106
                        ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.366107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-407104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFASVH RIFGASNVSK LLNDLPAVQR  60
EDAVNSLAYE AEARIRDPVY GCVSHISVLQ VRIRQVRDEL VAARKELAAY IGPAAFTPFV  120
ATPQQYHHQY AAGAGGGVPL ATGMGLAVGV GPQPHQQHGH PHQQQMMAHG QHLHHQHHLM  180
AAAEAQQQLA LAAQVAREQD VMMRQAVVYA HAVPGSGATV AVGPPDAVPY EGGFLFQQQH  240
HQQPPSQAQT TVALTYQMEQ SPPPSSPGQS HSHPEVSQQK NTDGSDEGSG GGGLVPPPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4741418125LOB family transfactor Ramosa2.1
5ly0_B2e-4741418125LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G362627
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G362627_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0633090.0BT063309.1 Zea mays full-length cDNA clone ZM_BFc0051C02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168375.10.0uncharacterized protein LOC100382144
RefseqXP_008643991.10.0putative LOB domain-containing family protein isoform X1
TrEMBLC0P4U00.0C0P4U0_MAIZE; LOB domain-containing protein 28
STRINGGRMZM2G362627_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-58ASYMMETRIC LEAVES 2-like 1