PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G369629_P02
Common NameZm.32829
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 259aa    MW: 27826.8 Da    PI: 10.1194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G369629_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.3e-1067111554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h+++E+rRR+riN  +++Lr+++P a       ++Ka+ L ++v  +k+L
  GRMZM2G369629_P02  67 HSAAEKRRRERINAHLATLRRMIPDA-----SQMDKATLLARVVCQLKDL 111
                        99***********************9.....5799999998888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-1253115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.95462111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1166118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-967114No hitNo description
PfamPF000106.6E-867111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-968117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-4155215No hitNo description
CDDcd048731.08E-6157221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009084anatomypericarp
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MASTASQPFQ EGKQHLHLNH GGRALHSAYG GTAAWPASSV TPPLTRLETP ASSSKSTAEA  60
RQALKIHSAA EKRRRERINA HLATLRRMIP DASQMDKATL LARVVCQLKD LKKKSAETTQ  120
PPLATIPGET NEIAVVCCTG TASTAYERAA ATYIRASVSC DDRPGLHADL AGALRAMRLR  180
PLRADMAALG GRAQCDFVLC REDGAGCRTL KALEEGVRQA LAKAAFPETP PYGCNAARSR  240
RQRLAGSHCY LHGFVAKLY
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G369629
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G369629_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0689000.0BT068900.1 Zea mays full-length cDNA clone ZM_BFc0165O19 mRNA, complete cds.
GenBankEU9735050.0EU973505.1 Zea mays clone 399867 DNA binding protein mRNA, complete cds.
GenBankKJ7268710.0KJ726871.1 Zea mays clone pUT3412 bHLH transcription factor (bHLH123) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152068.10.0uncharacterized protein LOC100285705
RefseqXP_008647968.10.0DNA binding protein isoform X1
RefseqXP_008647969.10.0DNA binding protein isoform X1
TrEMBLB6U8E00.0B6U8E0_MAIZE; BHLH transcription factor
STRINGGRMZM2G369629_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-24bHLH family protein