PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G370863_P01

Common Name

LOC103653502, ZEAMMB73_925953, ZHD19, Zm.20478

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

ZF-HD

Protein Properties

Length: 127aa MW: 13351.2 Da PI: 7.6021

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G370863_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.7	1.6e-29	30	85	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +vrY eC++NhAas+GghavDGC+Ef+++ geegtaa l+CaACgCHR+FHRr v+ GRMZM2G370863_P01 30 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEEGTAAVLHCAACGCHRSFHRRMVQR 85 69************************8.999******************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	25	No hit	No description
ProDom	PD125774	7.0E-19	1	93	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.7E-28	31	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.4E-24	32	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.766	33	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MMKRMVIVRR CHPPPPPPVL LFGGCPSAGG VRYGECRRNH AASMGGHAVD GCREFLAEGE 60 EGTAAVLHCA ACGCHRSFHR RMVQRSCCFC CDSADVAVAA AAAAAAAAER WDDDCSPESS 120 ASSSTPR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.20478	1e-179	meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G370863

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G370863_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727008	0.0	KJ727008.1 Zea mays clone pUT3984 ZF-HD transcription factor (ZHD19) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008678616.1	2e-86	mini zinc finger protein 4
Swissprot	Q0J5F8	1e-33	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	A0A3L6F4Z0	5e-85	A0A3L6F4Z0_MAIZE; Mini zinc finger protein 4
TrEMBL	K7TWH7	5e-85	K7TWH7_MAIZE; Mini zinc finger protein 2
STRING	GRMZM2G370863_P01	8e-86	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28917.1	3e-26	mini zinc finger 2

Link Out ? help Back to Top
Phytozome	GRMZM2G370863_P01
Entrez Gene	103653502

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]