PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G375307_P01
Common NameLOC103633124, Zm.66079
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 337aa    MW: 36717.5 Da    PI: 7.5074
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G375307_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.34.6e-1422125186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr.tse 74 
                        +W+++ +l L+ea++ ++   +r+klk  +W ++++ +                   +   ++p+qCk+k+e+++kry+++++ + +   + 
  GRMZM2G375307_P01  22 EWSESGILRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsvhcaddaaaagkppghGGGSSAKTPNQCKNKIESMKKRYRAEAAAAARAgPAA 113
                        5****************************************************955556689*******************99999885677 PP

           trihelix  75 ssstcpyfdqle 86 
                        +  t+++f +++
  GRMZM2G375307_P01 114 AGPTWRFFARMD 125
                        888*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1320126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDGLPDADTA PVAAAPAQKR DEWSESGILR LLEAYEAKWL LRNRAKLKWS DWVDIAREVS  60
VHCADDAAAA GKPPGHGGGS SAKTPNQCKN KIESMKKRYR AEAAAAARAG PAAAGPTWRF  120
FARMDGLLKG PPVCSAQVQQ PELTSSIDLR APAKPEAEVE LADFATQLRE AVPVPGAFSD  180
LMNIDTNGAV PDKAEKVDNS MQKESRPADS DANVSSPRSK VADEDVEEVD KAWDRPSKRK  240
STEFDIAKSI ELLASSFLKI EHARMEMYRE TERMRVEAEI KKGEMELKRT EIMAKTHLQI  300
ARLFAKKLKQ SSGKNGVSSS VTAEVDTLTK KGENGSG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.660791e-133embryo
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G375307
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G375307_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9414851e-105EU941485.1 Zea mays clone 1456327 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653024.10.0trihelix transcription factor ASIL1
TrEMBLA0A1D6IAL50.0A0A1D6IAL5_MAIZE; Sequence-specific DNA binding transcription factor
TrEMBLA0A3L6E1K30.0A0A3L6E1K3_MAIZE; Uncharacterized protein
STRINGGRMZM2G375307_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Representative plantOGRP44091421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-35sequence-specific DNA binding transcription factors