PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G376061_P01
Common NameLOC103651033, Zm.131487
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 182aa    MW: 19285.5 Da    PI: 7.1148
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G376061_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00116082123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k+F++   L  H  +H
  GRMZM2G376061_P01 60 FECKTCSKRFPSFQALGGHRTSH 82
                       89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-65784No hitNo description
PfamPF139124.0E-125982IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4296087IPR007087Zinc finger, C2H2
SMARTSM003550.186082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-6103132No hitNo description
Gene3DG3DSA:3.30.160.602.0E-4103132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139128.9E-11104129IPR007087Zinc finger, C2H2
SMARTSM003551.4105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.05105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVMTLTRDEA EGSKDMQGVR AHAEELSTLS SAVAAGTDGT PRPPSSGAAA RRAMAAEGVF  60
ECKTCSKRFP SFQALGGHRT SHTRLQARTM LSDQAAAERD RARAHECAVC GLEFAMGQAL  120
GGHMRRHRGE APPPAAQPAD RDMPDLNLPP LDDGNGSADG QGPRRSEDDR GSSKPQLLNL  180
LV
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G376061
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G376061_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9711160.0EU971116.1 Zea mays clone 357761 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674848.11e-129zinc finger protein ZAT9
TrEMBLA0A1D6N7K51e-127A0A1D6N7K5_MAIZE; Zinc finger protein ZAT11
TrEMBLA0A3L6FP701e-127A0A3L6FP70_MAIZE; Zinc finger protein ZAT8
STRINGGRMZM2G376061_P011e-128(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-23C2H2 family protein