PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G377217_P01
Common NameLOC103653860, ZEAMMB73_889400, Zm.83538
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 235aa    MW: 25642.8 Da    PI: 8.0156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G377217_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31159217159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vk+s +prsY+rCt+++C+vkk+ver ++d ++v +tYeg+H+h+
  GRMZM2G377217_P01 159 LDDGYKWRKYGQKVVKNSLHPRSYFRCTHSNCRVKKRVERLSTDCRMVMTTYEGRHTHS 217
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-32144217IPR003657WRKY domain
SuperFamilySSF1182908.37E-28151217IPR003657WRKY domain
PROSITE profilePS5081128.254154216IPR003657WRKY domain
SMARTSM007743.9E-37159218IPR003657WRKY domain
PfamPF031062.0E-24160216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEGGQLGTCL PSFLVPDHYA FPLPLPPLQL PSSQPNNKPF QMPFDDVQEE AGNHAGMLSS  60
SDHCGLYPLQ SLPFGSSASG GAGAAACGGK PTAVGFMPSC SAVGAEEVCT SVAPTTNGCN  120
ESNSAWWKAS AAERGKMKVR RKMREPRFCF QTRSDVDVLD DGYKWRKYGQ KVVKNSLHPR  180
SYFRCTHSNC RVKKRVERLS TDCRMVMTTY EGRHTHSPCS DDASSGDHTD CFSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-25150216874Probable WRKY transcription factor 4
2lex_A7e-25150216874Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.835380.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G377217
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G377217_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1915970.0KC191597.1 Miscanthus lutarioriparius zinc finger transcription factor WRKY12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335044.11e-177probable WRKY transcription factor 12
SwissprotQ93WY42e-59WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBLA0A3L6F4E11e-176A0A3L6F4E1_MAIZE; Putative WRKY transcription factor 12
TrEMBLK7UHL41e-176K7UHL4_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G377217_P011e-177(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.16e-61WRKY family protein
Publications ? help Back to Top
  1. Yu Y, et al.
    MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering.
    Plant Sci., 2013. 212: p. 1-9
    [PMID:24094048]
  2. Yang L, et al.
    PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa.
    Sci Rep, 2016. 6: p. 18643
    [PMID:26819184]
  3. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  4. Han Y, et al.
    WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis.
    Plant Mol. Biol., 2019. 99(1-2): p. 149-159
    [PMID:30617455]