PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G378490_P01

Common Name

DOF7, LOC107325937, Zm.34442

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Dof

Protein Properties

Length: 231aa MW: 23661.9 Da PI: 10.0144

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G378490_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.1	8.1e-38	40	96	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + l+cprC+s+ntkfCyynny+lsqPryfC+aCrryWt+GGalrnvPvGgg+rk GRMZM2G378490_P01 40 PEGLPCPRCESANTKFCYYNNYNLSQPRYFCRACRRYWTRGGALRNVPVGGGTRKAT 96 57899*************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-23	39	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-33	43	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MVRSSAATEV GQVPDGRPLP APVATGGGGG GTGTGGGREP EGLPCPRCES ANTKFCYYNN 60 YNLSQPRYFC RACRRYWTRG GALRNVPVGG GTRKATPAGR RKRAGPAPAT AAPPAPPPPS 120 ALHGSLLRPY GGLSFAAPAL ASPLAAVDPD RRLLDLGGSF TSLIAPGADV GVHFSAEFLV 180 GGLAPAALPR ATASVPALPP PPPQQHQQPT TVSQALPEGL FWSMGWPDLS I

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.34442	0.0	meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G378490

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G378490_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061950	0.0	BT061950.2 Zea mays full-length cDNA clone ZM_BFb0200H06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001307837.1	1e-162	uncharacterized protein LOC107325937
TrEMBL	A0A060D5B9	1e-161	A0A060D5B9_MAIZE; C2C2-DOF transcription factor (Fragment)
TrEMBL	A0A3L6FH85	1e-161	A0A3L6FH85_MAIZE; Dof zinc finger protein DOF2.2
STRING	GRMZM2G378490_P01	1e-161	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	2e-30	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	GRMZM2G378490_P01
Entrez Gene	107325937