PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G380377_P01
Common NameDBP4
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 232aa    MW: 24432.7 Da    PI: 4.4344
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G380377_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-1857108155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + y+GVr++   grWv+e+r+p   +k+ r++lg+f t+e Aa+a++ a+++l+g
  GRMZM2G380377_P01  57 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATPEAAARAHDVAALALRG 108
                        68****************9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-1457108IPR001471AP2/ERF domain
SMARTSM003801.9E-2558122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-3058118IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2058118IPR016177DNA-binding domain
PROSITE profilePS5103222.16858116IPR001471AP2/ERF domain
PRINTSPR003673.5E-55970IPR001471AP2/ERF domain
PRINTSPR003673.5E-58298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEYAAVGYGY GYGYDERQEP AESADGGGGG DDEYATVLSA PPKRPAGRTK FRETRHPVYR  60
GVRRRGPAGR WVCEVREPNK KSRIWLGTFA TPEAAARAHD VAALALRGRA ACLNFADSAR  120
LLQVDPATLA TPDDIRRAAI QLADAASQQD ETAAVAADVV APSQADDVAA AAAAAAAMYG  180
GGMEFDHSYC YDDGMVSGSS DCWQSGAGAG GWHSIVDGDD DDGASDMTLW SY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13561151271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.94630.0meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G380377
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G380377_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8057520.0FJ805752.1 Zea mays DRE-binding protein 4 (DBP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170481.11e-166uncharacterized protein LOC100384479
SwissprotA2Y8S64e-62DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C
SwissprotQ9LWV34e-62DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C
TrEMBLA0A3L6E7Z01e-164A0A3L6E7Z0_MAIZE; Dehydration-responsive element-binding protein 1C
TrEMBLC3UZ691e-164C3UZ69_MAIZE; DRE-binding protein 4
STRINGGRMZM2G380377_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP1274245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.13e-32dehydration response element B1A
Publications ? help Back to Top
  1. Kim SJ, et al.
    Ectopic expression of a cold-responsive OsAsr1 cDNA gives enhanced cold tolerance in transgenic rice plants.
    Mol. Cells, 2009. 27(4): p. 449-58
    [PMID:19390826]
  2. Kim MJ, et al.
    Quadruple 9-mer-based protein binding microarray with DsRed fusion protein.
    BMC Mol. Biol., 2009. 10: p. 91
    [PMID:19761621]
  3. Kim MJ, et al.
    Convenient determination of protein-binding DNA sequences using quadruple 9-mer-based microarray and DsRed-monomer fusion protein.
    Methods Mol. Biol., 2012. 786: p. 65-77
    [PMID:21938620]
  4. Min HJ,Jung YJ,Kang BG,Kim WT
    CaPUB1, a Hot Pepper U-box E3 Ubiquitin Ligase, Confers Enhanced Cold Stress Tolerance and Decreased Drought Stress Tolerance in Transgenic Rice (Oryza sativa L.).
    Mol. Cells, 2016. 39(3): p. 250-7
    [PMID:26674966]
  5. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]