PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G380515_P01
Common Namepco068737, ZEAMMB73_981121
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 201aa    MW: 21919.9 Da    PI: 9.081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G380515_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05172194123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cg++F  + +Lk+H+++H
  GRMZM2G380515_P01 172 HRCQECGRCFQKPAHLKQHMQSH 194
                        79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-5124194No hitNo description
SMARTSM0035522126148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5170197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653172199IPR007087Zinc finger, C2H2
PROSITE patternPS000280174196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MHGGTLELHP FLAPAFRRTT SLTTGAAAHT AAHCTPSVPR PRSALSARPP VARDARRTAP  60
SLLAAGDGTG GPLLGCAQAA RARSTPASVH LRQALLRTST HRMCSEVHVE GDASVGQKGC  120
KDIRRYKCEF CTVVRSKKCL IQAHMVAHHK DELDKSEIYN SDGEKIVHEQ EHRCQECGRC  180
FQKPAHLKQH MQSHSHEGID S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.669470.0ear| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G380515
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G380515_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9521560.0EU952156.1 Zea mays clone 1213665 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008654475.11e-139uncharacterized protein LOC100216772 isoform X2
TrEMBLK7V1N91e-138K7V1N9_MAIZE; Pentatricopeptide repeat-containing protein
STRINGGRMZM2G380515_P021e-138(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-16transcription factor IIIA