PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G382350_P01
Common NameLOC103651065
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 240aa    MW: 26821.8 Da    PI: 6.7409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G382350_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.82.6e-2452112258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58 
                        +Dgy+WrKYGqK ++gs++pr YYrCt++   gCp++k+ve++ ++dp ++ +tY++eH++
  GRMZM2G382350_P01  52 HDGYQWRKYGQKLIRGSTYPRCYYRCTYHqdhGCPATKHVEQTnSQDPPLFRVTYTNEHTC 112
                        7***************************98999*******975268*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-2537113IPR003657WRKY domain
SuperFamilySSF1182901.28E-2244112IPR003657WRKY domain
SMARTSM007743.0E-3551114IPR003657WRKY domain
PROSITE profilePS5081120.94353110IPR003657WRKY domain
PfamPF031068.2E-2553112IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAKRDGYMDS SCGYSNGTPK RLVQDSSSHV QAHAKKKVHI STRTQHTYAP YHDGYQWRKY  60
GQKLIRGSTY PRCYYRCTYH QDHGCPATKH VEQTNSQDPP LFRVTYTNEH TCCSAHVSDY  120
MASSVHIQQI ADASLRKLAD VEIPSLTHCF SGHELIKEEN DAVISSLLTA VSGCDVATSD  180
GVHAAIQENT PARMSRSSNE ASSSISPPVL LPASDNPKTD FIEPLETQWF EPLDLGWFIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-1440110369WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.334670.0embryo| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G382350
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00066PBMTransfer from AT1G66600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G382350_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566700.0EU956670.1 Zea mays clone 1570252 WRKY22 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020406019.10.0probable WRKY transcription factor 64
TrEMBLA0A1D6N8910.0A0A1D6N891_MAIZE; Putative WRKY transcription factor 30
STRINGGRMZM2G382350_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Representative plantOGRP1534434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.14e-21ABA overly sensitive mutant 3