PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G389567_P01
Common NameLOC100277208, Zm.67010
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 80aa    MW: 9217.19 Da    PI: 12.4053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G389567_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.62.9e-0531651955
                       HHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH 19 afeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       ++ eL++++P  a   + +K +   +L+++ eYI+ L+
  GRMZM2G389567_P01 31 RLRELKKIVPAgA---RRRKADVDVVLRRTAEYICALE 65
                       688********88...******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.9E-43072IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-53074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MVTLAGKGGR TSRGMVSLRR RRPFQLMVLR RLRELKKIVP AGARRRKADV DVVLRRTAEY  60
ICALELKVAL LRRLSHMYGV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.670101e-133ear| glume| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G389567
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G389567_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9673541e-133EU967354.1 Zea mays clone 301851 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008664631.11e-48uncharacterized protein LOC100277208
TrEMBLA0A317YIC72e-47A0A317YIC7_MAIZE; Uncharacterized protein
TrEMBLB6TQT92e-47B6TQT9_MAIZE; Uncharacterized protein
STRINGGRMZM2G389567_P014e-48(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP568856
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]