PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G392516_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 477aa    MW: 52719.8 Da    PI: 10.2487
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G392516_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57332.91.7e-1054144297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                        lfqr ws  De+ +L +l +++ ++g        +++  + +s++ + v  ++l  K r+LK+++ ++v k     +   + +h++  + ls
  GRMZM2G392516_P01  54 LFQRAWSPGDEVRILEALATYRREHGG-RLPTPVELFGALDGSLEKEgVGAKELAIKQRSLKRRYDRDVMK-----NAPPADKHERRLYLLS 139
                        79************************5.56666677888888887654999*****************999.....455678999******* PP

             DUF573  93 kkiWg 97 
                        k +Wg
  GRMZM2G392516_P01 140 KHVWG 144
                        ****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-1555144IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MASSSPQLKE PSSAVKRAST GPTALPERNK RKTSPSLPEA SGATQQPAKR KPPLFQRAWS  60
PGDEVRILEA LATYRREHGG RLPTPVELFG ALDGSLEKEG VGAKELAIKQ RSLKRRYDRD  120
VMKNAPPADK HERRLYLLSK HVWGRVPPTR PPVAKVRSAT QAKCAGAQAS NAAAQAQAKS  180
ADRQSGKEAL KPKAKTLDEM RELYPYLVDE ATILVEPAVL ERVLLNIEDI DAQVLDKKIR  240
KARKQLAGAI TESARINNME MPTIFLFTSS KLQPEKLRVE NDNNLLVDHL EKMDDVDICA  300
KQRLARVEHE VMELRQTVIA YQAQAKVESI PRNNISSVKG IICESAKSGL QSIVAENQTP  360
ANVLQKKTEV PNGLIHKKNA AVTSKYYCAV PHNVPPNKPK MQGVMLPPFK VFPVGGKEHD  420
ARDLVFIDKA KLLEREYVAC HGKVRQHRVV GDDVSSVGEV RVEDLKIAPL RAGVLDP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G392516
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G392516_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9704870.0EU970487.1 Zea mays clone 346438 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648544.20.0uncharacterized protein LOC103629130 isoform X2
TrEMBLA0A1D6LF260.0A0A1D6LF26_MAIZE; Tyrosine specific protein phosphatase-like
STRINGGRMZM2G392516_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Representative plantOGRP1362023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00610.15e-09DNA-binding storekeeper protein-related transcriptional regulator