PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G396451_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 1460aa    MW: 160787 Da    PI: 9.1402
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G396451_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA30.84.1e-10542566125
               GATA   1 CsnCgttkTplWRrgpdgnktLCna 25 
                        C +Cg+  Tp+WR+gp g+ tLCna
  GRMZM2G396451_P02 542 CLQCGAAVTPQWRSGPMGQGTLCNA 566
                        89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001202.3E-20115228IPR008146Glutamine synthetase, catalytic domain
Gene3DG3DSA:3.30.590.106.7E-21116228IPR014746Glutamine synthetase/guanido kinase, catalytic domain
SuperFamilySSF559315.1E-18116226No hitNo description
SuperFamilySSF561121.96E-12265385IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.103.4E-10267331No hitNo description
PfamPF077141.9E-9269331IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE profilePS501149.288536578IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-7536593IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-7537580No hitNo description
Gene3DG3DSA:3.30.50.105.6E-8540579IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.55E-8542597No hitNo description
PfamPF003201.2E-7542566IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.40.30.103.8E-12637706IPR012336Thioredoxin-like fold
PfamPF139051.1E-11640706IPR012336Thioredoxin-like fold
PROSITE profilePS513529.107759905IPR013766Thioredoxin domain
SuperFamilySSF528331.91E-17772880IPR012336Thioredoxin-like fold
Gene3DG3DSA:3.40.30.101.7E-31772885IPR012336Thioredoxin-like fold
PfamPF139053.7E-22784877IPR012336Thioredoxin-like fold
Gene3DG3DSA:3.30.230.101.3E-7010501238IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
SuperFamilySSF542111.59E-4010511237IPR020568Ribosomal protein S5 domain 2-type fold
TIGRFAMsTIGR012404.2E-9510541368IPR029765Diphosphomevalonate decarboxylase
PfamPF002881.9E-411551213IPR006204GHMP kinase N-terminal domain
Gene3DG3DSA:3.30.70.8901.6E-7412391441IPR013750GHMP kinase, C-terminal domain
SuperFamilySSF550601.44E-5412421455IPR013750GHMP kinase, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0019287Biological Processisopentenyl diphosphate biosynthetic process, mevalonate pathway
GO:0045454Biological Processcell redox homeostasis
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004163Molecular Functiondiphosphomevalonate decarboxylase activity
GO:0004356Molecular Functionglutamate-ammonia ligase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1460 aa     Download sequence    Send to blast
MGVDAAASAR LLPAMGVTWR FGPQAIHEGL HVPLLQMRFT NSKLLIVNLS QQRAMAIGGL  60
LGGPGRCTVV SMDEIKRTVP CWSVSSPFVN IGIYRSSPKQ LRSDSARYLE WSLSMLGKEN  120
REAPLRIACP PGVPLDLVSN FEIKSFDGCA NPHLGLAAVV AAGIDGLRRH LKLPEPIESN  180
SSDHSSKLKR LPQNLQESVE SLSVDKVLHE LIGDKLVTTA IAIRKQGIKY SNFSDLCQKQ  240
EAVKEVLGSL AKFACVLFPN IPEAYLDRWC DVYSFGVILW ELATLRMPWS GMNPMQVVGA  300
VGFQDRRLDI PKEVDPLVAR IIFECWQNDQ QRTGIYLVHL KAGARASTTH RAPAPAPARN  360
VFLPAIPPPP TPSLPFPASR PRRPSLQSRP RQRRVPAAHL SHLFLSLALL TRRRSVGCRL  420
SCLLARPLFM VMVDEGGKGE AQPPGLDPRT RRSAATRATD DMDGGGRGEE WEGAPPATCS  480
RSRRRRCPCP SSSPAWTPPS GARGATISAT VAIRRAGPAA PAPGPHTPTP AEERSAKRVR  540
MCLQCGAAVT PQWRSGPMGQ GTLCNAYRVR LKVAGVLRDQ GRLLPEYRPL ASPTFEPSEH  600
ANKHSQVMQL HRQRKSQGQH HPLPAEHPRA MDVLQFPQRW QAYTALRSAG KSVEIIFVSL  660
DRDEASFRDH FQGMSWLAVP FDAAGLLRQK LCARFAIERI PALIPLSASA TPSSGLGCGE  720
DAVRLVGEYG VDAYPFSAQR RRELESMDDA RRGGGRLQEL LGCEERDYVI SADDIKIPIA  780
DLAGKTVGLY FGAHWCPPCH VFTKQLKEVY NELKILRPVS FEVIFVSIDR SKGEFQASMS  840
SMPWLAIPYS DAVRKKLTRI FVVKGIPGLL ILGLDGKALK TDVHRPELLP TYEGSRCNKI  900
KGIKAPRITP KNVIRFSSYT DTFYFITPEA WYWSEYLYLK KESLTVVISD VKCDDLKEEG  960
KVQQTKRGNS IHDHSSSHSI RSFSALTESG PGLTSVHPSS RTRPPPFYAL LPRSDGPFAG  1020
DEHTPQQELS GVEQREARDP MAAAEGQWVL MATGRTPTNI AVIKYWGKRD EALILPINDS  1080
ISVTLDPDHL SATTTVAVSP SFPSDRMWLN GKEISLLGGR FQSCLREIRK RARDFEDKEK  1140
GVKIKKEDWD KLHVHIASYN NFPTAAGLAS SAAGLACFVF TLGKLMNVKE DYGELSSIAR  1200
QGSGSACRSI YGGFVKWCMG EKDDGSDSIA VQLADETHWN DLVIIIAVVS SKQKETSSTS  1260
GMRDSVETSP LLQYRAQTVV PGRVLKMEEA IKNRDFESFA KLTCADSNQF HAVCLDTSPP  1320
IFYMNDTSHR IISLVEKWNH SEGTPQVAYT FDAGPNAVLI AQNRKTAAHF LQKLLYYFPP  1380
QDNDLSSYLV GDKSILGDAG LHSMKDVEAL PAPPDTKIPD QKFKGDVSYF ICSRLGAGPK  1440
VVVDEGQALI DSVTGLPKGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6n10_A0.0104414585415Diphosphomevalonate decarboxylase MVD1, peroxisomal
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.143760.0cell culture| ear| embryo| endosperm| meristem| ovary| pericarp| pollen| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G396451
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G396451_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9603980.0EU960398.1 Zea mays clone 224503 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1R3MKD70.0A0A1R3MKD7_MAIZE; Diphosphomevalonate decarboxylase MVD2
STRINGGRMZM2G396451_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-21GATA transcription factor 9