PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G396527_P01
Common NameHB70, ZEAMMB73_786346, Zm.158870
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 164aa    MW: 18804.2 Da    PI: 10.5114
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G396527_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-1859114456
                        -SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ft+eq++ Le+ F+    + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  GRMZM2G396527_P01  59 KRRFTEEQIRSLESTFRarhGHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 114
                        458**************654599********************************9 PP
2HD-ZIP_I/II119.81.5e-3857151192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee...kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                        e+krr+++eq+++LE++F++++   kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy++L++++d l+++ e+L++++ +L +
  GRMZM2G396527_P01  57 ERKRRFTEEQIRSLESTFRARHghaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAVLRAKFDDLHARVESLRRDKLALST 148
                        69****************9765556*****************************************************************99 PP

        HD-ZIP_I/II  90 elk 92 
                        +++
  GRMZM2G396527_P01 149 QVA 151
                        886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-1839118IPR009057Homeodomain-like
PROSITE profilePS5007117.5453116IPR001356Homeobox domain
SMARTSM003892.0E-1756120IPR001356Homeobox domain
CDDcd000861.63E-1458117No hitNo description
PfamPF000464.5E-1659114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-1959123IPR009057Homeodomain-like
PRINTSPR000313.3E-78796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000313.3E-796112IPR000047Helix-turn-helix motif
PfamPF021834.8E-12116151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDRPGHHQHH FFMPPPPQQQ QQQLCVPMMD DPSSFLAELM GVGGGGGGGP SSSARGERKR  60
RFTEEQIRSL ESTFRARHGH AKLEPREKAE LARELGLQPR QVAIWFQNKR ARWRSKQLEH  120
DYAVLRAKFD DLHARVESLR RDKLALSTQV ASDPRYSVRS DDVL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G396527
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G396527_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284020.0KJ728402.1 Zea mays clone pUT6707 HB transcription factor (HB70) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401243.11e-106homeobox-leucine zipper protein HOX22 isoform X2
SwissprotA2X7U12e-47HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLK7TR631e-116K7TR63_MAIZE; HB transcription factor (Fragment)
STRINGGRMZM2G396527_P011e-117(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-33homeobox 7