PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G396825_P01
Common NameLOC103651946
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 297aa    MW: 32555.4 Da    PI: 8.7176
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G396825_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like53.36.3e-1774135155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk.......gLtlehvkSHLQkYRl 55 
                        +prl Wt  LH+ Fvea e+  G++ A+Pk+ile m  k        +t+e+v+SHLQkY+l
  GRMZM2G396825_P01  74 RPRLIWTRRLHDLFVEAYEKSLGEDDAVPKRILENMREKmspaetsEITREQVASHLQKYKL 135
                        59****************9877*************975422222228*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-1972138IPR009057Homeodomain-like
SuperFamilySSF466893.05E-1272138IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1675135IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MESRDVKAEQ RQQQPELPKK RRRQKLLESA QASGGSSMSV AESSHSRTSA PAPPAGSDDA  60
GAGGNGHQHQ QGKRPRLIWT RRLHDLFVEA YEKSLGEDDA VPKRILENMR EKMSPAETSE  120
ITREQVASHL QKYKLNLRSK EAERPPGGVQ QQQASAEAST SQPRPRSLPP ATPSAEVSQV  180
AANLQPVPQL SGLPIWDRQA QPAEAMQRIP ADSSCPVVEG RNRFAHQHME TPPAAILLPE  240
TNTEAAVTLT RLARATQDGN VVGPEPAPAC DIIERYWKSP RNEAFLSWDL FGLSPGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11724PKKRRRQK
21825KKRRRQKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G396825
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G396825_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8874021e-174JQ887402.1 Zea mays isolate 8112 clone 1 GRMZM2G396825-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675832.10.0transcription factor NIGT1
TrEMBLA0A1D6MRU70.0A0A1D6MRU7_MAIZE; Uncharacterized protein
STRINGGRMZM2G396825_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5792122
Representative plantOGRP1965422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.18e-12G2-like family protein