PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G403590_P01
Common NameLOC100277305, LOC103647448, Zm.131212
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 137aa    MW: 14693.4 Da    PI: 9.2144
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G403590_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-052446123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C++ F ++  L  H++ H
  GRMZM2G403590_P01 24 FVCTYCDRKFFTSQALGGHQNAH 46
                       89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-81469No hitNo description
PROSITE profilePS5015711.0112451IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0020040anatomyleaf base
PO:0001007developmental stagepollen development stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MEQELSLELT LFHPSVSPEP PGYFVCTYCD RKFFTSQALG GHQNAHKYER SLAKRRREIA  60
TALRAHGAAA TATGVQDAAA MGSRDVPARP QGTGSGADKS ATRMDKHKAP ADDAAPAPAA  120
SSNRKRSSEE LDLSLRL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G403590
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G403590_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679740.0EU967974.1 Zea mays clone 312184 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144380.11e-96uncharacterized protein LOC100277305
RefseqXP_008670210.11e-96zinc finger protein 2
TrEMBLA0A3L6G0Q73e-95A0A3L6G0Q7_MAIZE; Zinc finger protein 2
TrEMBLB6TSK93e-95B6TSK9_MAIZE; Zinc finger protein 2
STRINGGRMZM2G115388_P016e-96(Zea mays)
STRINGGRMZM2G403590_P016e-96(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.12e-15zinc finger protein 2
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]