PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G404769_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 453aa    MW: 49968 Da    PI: 9.9073
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G404769_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP49.66.6e-162803114071
            E2F_TDP  40 knkrRRiYDilNVLealnliekkekneirwkg 71 
                          ++RRiYDi+NVLe+++liekk kn+irwkg
  GRMZM2G404769_P02 280 MVQKRRIYDITNVLEGIGLIEKKLKNNIRWKG 311
                        359***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013728.8E-9236311IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.1E-15277313IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-10278312IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.7E-13281311IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF001491.6E-6318394IPR004843Calcineurin-like phosphoesterase domain, apaH type
SuperFamilySSF563003.98E-18321398IPR029052Metallo-dependent phosphatase-like
Gene3DG3DSA:3.60.21.102.4E-21326409IPR029052Metallo-dependent phosphatase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MNRKCLYSRL GTTTLSLRTM KAQISNGRGG CLALKLAEHE GRGGNLSKLL PLFLTEQSLH  60
EAKADPAKAT ANGVPNGTGH SYSGTVPSQQ NSALTPDGNY RAPLLGGVPS AGYLDTTYGY  120
DSTGAQFAWY DGSAYANGQQ RTTTTNRFPS SSFSGNGSSA RYQNKSSTTQ QMGMQNRRPT  180
TTSAAPTYPN RMYPSPRPYT QYGNSVKTGL PYGSNGYDSR INGRCGLGMD NRYRPRACSG  240
YYGYGNESQD GTIELNRGPR SGRFKNQKLY GHTVTIDPVM VQKRRIYDIT NVLEGIGLIE  300
KKLKNNIRWK GVDDSRPGEF SDDMSILQMG RVREKLDIDF VISTGDNFYK NGLKGVRDQA  360
FKESFMDIYI AQSLQKPWYS VLGNHDYMGN ALAQLSPVLR KIDDRFICMR SSSLTQNLWT  420
SSLSTPLHSN WSIGLTLASI VMTGEGWRLE AST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1war_A2e-1330939619107HUMAN PURPLE ACID PHOSPHATASE
2bq8_X2e-1330939613101TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.834060.0ear| embryo| endosperm| glume| leaf| meristem| ovary| pericarp| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G404769
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G404769_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663900.0BT066390.1 Zea mays full-length cDNA clone ZM_BFc0033N20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6F0X50.0A0A3L6F0X5_MAIZE; Purple acid phosphatase 17 (Fragment)
STRINGGRMZM2G404769_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.33e-16E2F transcription factor 1