PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G404973_P02
Common NameZm.112552
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 120aa    MW: 13444.6 Da    PI: 11.6181
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G404973_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.84e-204074135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  GRMZM2G404973_P02 40 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 74
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.4E-163488IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.0043770IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-143797No hitNo description
Gene3DG3DSA:3.30.50.107.7E-163972IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.20E-123996No hitNo description
PROSITE patternPS0034404065IPR000679Zinc finger, GATA-type
PfamPF003204.2E-184074IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MTSRSWSGCP VSWTTRSLSC RRRRSLPPLW LRRWLGGPRC SHCGVQKTPQ WRAGPEGAKT  60
LCNACGVRYK SGRLLPEYRP ACSPTFVSSI HSNSHRKVLE MRRKKEGDMV ATAAPAVASF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1125521e-129meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G404973
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G404973_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0637230.0BT063723.1 Zea mays full-length cDNA clone ZM_BFc0099O23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.13e-52uncharacterized protein LOC100284693
SwissprotQ9FH574e-39GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A060D7824e-51A0A060D782_MAIZE; C2C2-GATA transcription factor (Fragment)
TrEMBLA0A1D6E4G03e-51A0A1D6E4G0_MAIZE; GATA zinc finger family protein
STRINGGRMZM2G404973_P039e-51(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-40GATA transcription factor 5