PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G405170_P01
Common NameLOC103642409, ZEAMMB73_809379
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 224aa    MW: 25264.9 Da    PI: 9.9695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G405170_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.19.2e-2528125194
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+kv tpsdv+k++rlv+pk+fae+h          +++ l + d  + g+ W+++++y+ +s++yv+tkGW+++v++++L ++D+v F + 
  GRMZM2G405170_P01  28 FEKVVTPSDVGKLNRLVVPKQFAERHlplrgAAARSRGTVLCFHDdaRGGEAWRFRYSYWSSSQSYVITKGWSRYVRDKRLATRDIVAFCR- 118
                        99***************************983344466778888866677***************************************94. PP

                        SSSEE..EE CS
                 B3  86 grsefelvv 94 
                          ++++l++
  GRMZM2G405170_P01 119 --DGARLFI 125
                        ..4455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-3320135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-2624132IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-1926121No hitNo description
PfamPF023624.9E-2228127IPR003340B3 DNA binding domain
SMARTSM010191.2E-1428133IPR003340B3 DNA binding domain
PROSITE profilePS5086312.53428131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MALTTLALEL ESAAGDYSHS HSRRERMFEK VVTPSDVGKL NRLVVPKQFA ERHLPLRGAA  60
ARSRGTVLCF HDDARGGEAW RFRYSYWSSS QSYVITKGWS RYVRDKRLAT RDIVAFCRDG  120
ARLFIDCQRR RRTTTRRSGS EGAVVLPAPA IGAAVPPMCQ LQMTVVFPDG QHQQAAVAMK  180
KETAAAQEED DKEAQRRCGR CLRLFGVNLL DELRTEPLLL DLQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-39241304113B3 domain-containing transcription factor NGA1
5os9_B6e-39241304113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G405170
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G405170_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269650.0KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663910.21e-165B3 domain-containing protein Os06g0107800
SwissprotQ5VS553e-45Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A3L6DGM41e-164A0A3L6DGM4_MAIZE; B3 domain-containing protein
TrEMBLK7UE081e-164K7UE08_MAIZE; B3 domain-containing transcription factor NGA2
STRINGGRMZM2G405170_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Representative plantOGRP1558924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.19e-40B3 family protein