PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G406204_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 664aa    MW: 73381.3 Da    PI: 5.7927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G406204_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.6e-5761331128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhPtdeel+ +yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd+
  GRMZM2G406204_P01   6 LPPGFRFHPTDEELIIYYLKRKINGRQIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDR 96 
                        79****************************.99**************95334455777********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +v s ++++vg+kktLv+y+grap+g++tdWvmheyrl
  GRMZM2G406204_P01  97 KVNS-HRRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133
                        ****.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-644156IPR003441NAC domain
PROSITE profilePS5100561.6016156IPR003441NAC domain
PfamPF023659.4E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELI IYYLKRKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS HRRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET DTGLQDAYAL CRVFKKTAPG PKIIEHYGAV HHPIEHPQWM  180
AEAGSVDRHS PTLDLSSDAR GDDFESSSFS FPTEAPSMDS MHGMQMSAPH EDGKWMQFLS  240
EDAFNATNNP FFMNPPSSSS FPCLPSKVDV ALECARIQHR LSLPPLEVED FPQDVSLDTK  300
ASVLRSNPNE VDILQEFLSV ASASQELING ATSSCYAAEL WPSGAGTSST STHYVNELSS  360
LVELGVKAKE EADNFYYMDC IVGTSVGFSS KSSVQVDEQA VRLVEIADIE GLKQEEKRQV  420
ENLRGVRLHN NDLGEIVVQG DESNPTDCIT QYPISDYSAD NLGEAGHLAD PTDVGGGLAT  480
APIFSQSQPD DFAIGFGDVD VNPNASFDLY ERVDVKHGLF VSTAGAPKTF FHHVEPSKKV  540
SVYLSPVASD VVGKATEKFH SPITVTATKA SVFSKLKALV TRQGQIPGGE DASIMPPEVL  600
RQQRNSGSPT TMNTEQELVK KAKKVMKPGH GGGDGNQACL LLPLSKRSKG ISSMFFSVRN  660
GHNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-56116212171NO APICAL MERISTEM PROTEIN
1ut4_B7e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_A7e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_B7e-56116212171NO APICAL MERISTEM PROTEIN
3swm_A7e-56116215174NAC domain-containing protein 19
3swm_B7e-56116215174NAC domain-containing protein 19
3swm_C7e-56116215174NAC domain-containing protein 19
3swm_D7e-56116215174NAC domain-containing protein 19
3swp_A7e-56116215174NAC domain-containing protein 19
3swp_B7e-56116215174NAC domain-containing protein 19
3swp_C7e-56116215174NAC domain-containing protein 19
3swp_D7e-56116215174NAC domain-containing protein 19
4dul_A7e-56116212171NAC domain-containing protein 19
4dul_B7e-56116212171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.77560.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G406204
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G406204_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279780.0KJ727978.1 Zea mays clone pUT6092 NAC transcription factor (NAC78) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288459.10.0uncharacterized protein LOC103630963
TrEMBLA0A1D6JLP20.0A0A1D6JLP2_MAIZE; NAC domain containing protein 28
STRINGGRMZM2G406204_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66243651
Representative plantOGRP87171015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-129NAC domain containing protein 28