PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G406651_P01
Common NameFAR1.14, Zm.25672
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 855aa    MW: 94584.7 Da    PI: 7.405
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G406651_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.85.6e-2174178190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkek.dgkw 76 
                        +fY++YA ++GF vrks+++k++r++ +t+r fvCsk+g+r+e kk                +     + + +rtgC a+l++k+    + +
  GRMZM2G406651_P01  74 EFYKAYAARLGFVVRKSNKSKNSRHT-VTRRLFVCSKQGFRQEPKKPqdetagsgvasspslSLVPAPRCPDSRTGCLASLTIKLIPsANAF 164
                        6*****************99997666.****************99997888888777666553444448899**************9999** PP

               FAR1  77 evtkleleHnHela 90 
                        +vt+++ +HnH+la
  GRMZM2G406651_P01 165 RVTDFVADHNHPLA 178
                        ************97 PP
2FAR169.11.1e-21226325290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                        fYn+YA++vGFsvr+s++k++   g i++r fvCs+eg ++++k++             + + r   + trtgC+a++++k +   +++v+k
  GRMZM2G406651_P01 226 FYNRYAEHVGFSVRRSYKKRK--RGMIVSRIFVCSREGVSDRTKQEggaivianggagsAGTPRPGPPPTRTGCQARMVIKITPCRTYRVAK 315
                        9*************9976665..899****************9999**********9977777778899*********************** PP

               FAR1  81 leleHnHela 90 
                        +  eHnH+la
  GRMZM2G406651_P01 316 FFPEHNHPLA 325
                        ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-1874178IPR004330FAR1 DNA binding domain
PfamPF031011.1E-18226325IPR004330FAR1 DNA binding domain
PfamPF105518.4E-23414508IPR018289MULE transposase domain
PROSITE profilePS5096610.089682729IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-5699728IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-6704731IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MSTAGDPSRL SGESSPSSST SSGSSSHSSG AADAAATNLA LTAPTSALAD DTDADAPTSP  60
RVGTYFETED DAYEFYKAYA ARLGFVVRKS NKSKNSRHTV TRRLFVCSKQ GFRQEPKKPQ  120
DETAGSGVAS SPSLSLVPAP RCPDSRTGCL ASLTIKLIPS ANAFRVTDFV ADHNHPLASS  180
SPAVSLALLS PSSSHHSIVA VASLPDPRDG PRADMHFETE EDAYVFYNRY AEHVGFSVRR  240
SYKKRKRGMI VSRIFVCSRE GVSDRTKQEG GAIVIANGGA GSAGTPRPGP PPTRTGCQAR  300
MVIKITPCRT YRVAKFFPEH NHPLANPDSV HKLRSHKMRA RAHELGAGEM HRRKQGKGVQ  360
LGDVGAALQY LEELQVENPS VYYAVGVGPD GKSAVNFFWA DAKSIIDYRS FGDVVCFDTT  420
YALNIYGRPF ALFVGVDNHK QLLVFGAALL YDESIQSLKW VFEVFADAMH ARHPQTILID  480
ERPECAIAAA EVWPGTNHCT GVWHIYHNSK RHLKQVFESS KSFSNALNHC LFECEDEIEF  540
LSAWEKLVEK HDIGESEWLS RLYLEKEKWA LPYQRTMFSA DILSTLRKDN MINELRRDLS  600
EQEDILQFFR RYESILEEHR SKKLHADVDG SQVTLPIPSL RMLKQSSNAY TPEAFKMFQG  660
EFEAYMNCMS FPCGVVGTIS EYKIVLDEKP SESFVKFDAL DGSTTCSCKK FEAVGIQCCH  720
VLKVLDLKNI KELPEQYILK RWRKDARSVQ IGEEPTYGSG SVMRSTSEAR FSNMCRLASL  780
IASRAAKSED VMSYIESQSN AIQKHLDDIL HTSYPDMGNH TVASSSQAIS FVGTQHPDHS  840
TPVVVAQTTN GLMGL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.256720.0cell culture| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G406651
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G406651_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493640.0EU949364.1 Zea mays clone 403232 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653099.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A096TM770.0A0A096TM77_MAIZE; Protein FAR1-RELATED SEQUENCE 5
STRINGGRMZM2G406651_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1399044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-87FAR1-related sequence 5