PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G407119_P02
Common NameZEAMMB73_862760, Zm.125620
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 239aa    MW: 26951.7 Da    PI: 8.6411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G407119_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11163211355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++  L++l+P +    +k   Ka++L + ++Y++sLq
  GRMZM2G407119_P02 163 NSHSLAERFRREKINVRMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 211
                        58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.91E-9158215No hitNo description
SuperFamilySSF474594.19E-17158225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17160224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9163211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MMYSPPRTDP DREDEQCFAI GANLLSSLDH TMKFDEPIAF PMNNVGMQER VQLYNSTGDA  60
QLSRNANTGK CSKGGKRKSS GGINSSLHSL VRKLEATVAL FHRLHHTSLP LFHPTVHINV  120
LLQDEARALL QREVSMECAD ENAAGAKRED YAHVRAKRGQ ATNSHSLAER FRREKINVRM  180
KLLQDLVPGC NKITGKAMML DEIINYVQSL QRQVEFLSMK LSAIRPGFNR DLELQDDHP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1256200.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G407119
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G407119_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9740820.0EU974082.1 Zea mays clone 439268 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660368.11e-143transcription factor bHLH74
TrEMBLA0A3L6DCZ01e-170A0A3L6DCZ0_MAIZE; Transcription factor bHLH62
STRINGGRMZM2G407119_P011e-176(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-42bHLH family protein