PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G409452_P01
Common NameLOC103646730
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 102aa    MW: 10823.9 Da    PI: 8.7014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G409452_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-052547123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ F++   L  H++ H
  GRMZM2G409452_P01 25 YECSFCKRGFTNAQALGGHMNIH 47
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.0E-62449IPR007087Zinc finger, C2H2
SuperFamilySSF576676.64E-72451No hitNo description
Gene3DG3DSA:3.30.160.601.7E-42551IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0092547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3232552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MEGGFNKSGS PEAEGSRRTP AGAYYECSFC KRGFTNAQAL GGHMNIHRKD RGGGSRSGTA  60
PPQQDDAGGS RTYGAGDVHL GLSLGRKEDV DLELRLGSYP YK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.16771e-135pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G409452
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G409452_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9479761e-171EU947976.1 Zea mays clone 368057 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008669637.12e-69zinc finger protein JAGGED-like
TrEMBLA0A096TMP94e-68A0A096TMP9_MAIZE; C2H2 and C2HC zinc fingers superfamily protein
TrEMBLA0A3L6DVI84e-68A0A3L6DVI8_MAIZE; Transcriptional regulator TAC1
STRINGGRMZM2G409452_P017e-69(Zea mays)
STRINGGRMZM2G443109_P017e-69(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-17C2H2 family protein