PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G414252_P01
Common NamebHLH20, LOC100217048
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 242aa    MW: 26394.9 Da    PI: 9.6576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G414252_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08173213954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  GRMZM2G414252_P01 173 ARLRRERISERIRALQRLVPGG-----TKMDTASMLDEAIQYVKFL 213
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.069164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-14165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-15168227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.6E-14170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6174213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-6186218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MEFDLLNYYS PEEAQLELMN TMLQLEQLTA LDGHRQSAMA PASPPISPMQ THHAGPHSFS  60
PLPHTSTTTT TTATATGYPK KQHAPPRAVY GAATSSGLEH HHLQLQDGGA LQAGPSSAAA  120
ASADAMREAI FRIAALQPVE DQTTTGPEPE AAVRRAPKRR NVRVSKDPQS VAARLRRERI  180
SERIRALQRL VPGGTKMDTA SMLDEAIQYV KFLKSQLQSL QRAAASRHAP WQYALLPHAD  240
ML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RAPKRR
2173178RLRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G414252
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G414252_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0378250.0BT037825.1 Zea mays full-length cDNA clone ZM_BFb0198D08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136892.11e-176uncharacterized protein LOC100217048
TrEMBLA0A3L6FYU71e-174A0A3L6FYU7_MAIZE; Transcription factor HEC1
TrEMBLB4FL371e-174B4FL37_MAIZE; BHLH transcription factor
STRINGGRMZM2G414252_P011e-175(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.18e-28bHLH family protein