PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G414805_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 215aa    MW: 23013.7 Da    PI: 9.4985
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G414805_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP74.81.5e-23160209251
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEE CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhe 51 
                        CqvegC++dls+ak+y+r+hkvC vhska++v+v+gle+rfCqqCsr+ +
  GRMZM2G414805_P02 160 CQVEGCKVDLSSAKDYNRKHKVCVVHSKATKVVVAGLERRFCQQCSRYKA 209
                        ***********************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-23152208IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.922157215IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-22158209IPR004333Transcription factor, SBP-box
PfamPF031101.4E-17160209IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGSFGMNWNQ KDPMVWDWEH LVPSVSNAVT RHGSANSSGG TLTSNSELGH GSSKSSISAS  60
IDSPSGVGNS LEFNFAAVER HVKNTGTNGR VDDSGNSPSS MIAFNQGEPL ISLKLGKRAY  120
FENACGGQDA KVSAASDVTS AASVVKKTKV SQQNAKNWYC QVEGCKVDLS SAKDYNRKHK  180
VCVVHSKATK VVVAGLERRF CQQCSRYKAA DKSFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-16160207653squamosa promoter-binding protein-like 12
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.265610.0ear| meristem| pericarp| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G414805
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G414805_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0838130.0BT083813.1 Zea mays full-length cDNA clone ZM_BFb0042E10 mRNA, complete cds.
GenBankBT0838720.0BT083872.1 Zea mays full-length cDNA clone ZM_BFb0049I24 mRNA, complete cds.
GenBankBT0841320.0BT084132.2 Zea mays full-length cDNA clone ZM_BFb0079J02 mRNA, complete cds.
GenBankEU9636370.0EU963637.1 Zea mays clone 265056 squamosa promoter-binding-like protein 11 mRNA, complete cds.
GenBankEU9698240.0EU969824.1 Zea mays clone 336108 squamosa promoter-binding-like protein 11 mRNA, complete cds.
GenBankKJ7279790.0KJ727979.1 Zea mays clone pUT6094 SBP transcription factor (SBP25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149534.11e-149SBP-transcription factor25
RefseqNP_001352585.11e-149SBP-transcription factor25
RefseqXP_008643717.11e-149squamosa promoter-binding-like protein 11 isoform X1
RefseqXP_008643719.11e-149squamosa promoter-binding-like protein 11 isoform X1
RefseqXP_008643720.11e-149squamosa promoter-binding-like protein 11 isoform X1
SwissprotA2YGR51e-71SPL12_ORYSI; Squamosa promoter-binding-like protein 12
SwissprotQ5Z8181e-71SPL12_ORYSJ; Squamosa promoter-binding-like protein 12
TrEMBLA0A3L6EKM41e-148A0A3L6EKM4_MAIZE; Squamosa promoter-binding-like protein 12
TrEMBLB6TF721e-148B6TF72_MAIZE; SBP transcription factor
TrEMBLC4IZ751e-150C4IZ75_MAIZE; Squamosa promoter-binding-like protein 11
STRINGGRMZM2G414805_P051e-148(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-27squamosa promoter binding protein-like 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu Q, et al.
    The alteration in the architecture of a T-DNA insertion rice mutant osmtd1 is caused by up-regulation of MicroRNA156f.
    J Integr Plant Biol, 2015. 57(10): p. 819-29
    [PMID:25677853]