PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G415229_P01
Common NameLOC100384464, THX3, ZEAMMB73_306264
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 271aa    MW: 31896.9 Da    PI: 9.2096
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G415229_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix772.9e-2418100186
           trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W  qe+++Li arreme++  + ++++k+ We+v++++rerg++r+++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  GRMZM2G415229_P01  18 QWGVQETRELIVARREMEREAVAaRRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 100
                        7*****************9877526899************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122036.90E-181783No hitNo description
PfamPF138373.7E-2118101No hitNo description
Gene3DG3DSA:1.10.10.606.6E-41877IPR009057Homeodomain-like
PROSITE profilePS500907.6661976IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MMEAGGAGAG GRDERVPQWG VQETRELIVA RREMEREAVA ARRSAKTMWE AVAARLRERG  60
YRRTAEQCKC KWKNLVNRYK GKETSDPENG RQCPFFDELH AVFTDRARDM QRQLLESESG  120
ASVKRKLKQP GGDRSSGLSD DEGNGGEESD EEKPLPSRKR KADDKKQQHQ RMSGKSRAGF  180
SSIHELLQDF LVQQQHIDVW WREMMERRAQ ERIVFEQQWR QTMQKLEQER LLLEHSWMER  240
EEQRRMREET RAEKRDALLT ALLNKLLQED L
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.290750.0endosperm| meristem| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G415229
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G415229_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0702020.0BT070202.1 Zea mays full-length cDNA clone ZM_BFc0184N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170467.10.0uncharacterized protein LOC100384464
TrEMBLC0PPI30.0C0PPI3_MAIZE; Uncharacterized protein
STRINGGRMZM2G415229_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.15e-26Trihelix family protein