PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G416701_P02
Common NameZm.99687
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 245aa    MW: 26541.2 Da    PI: 6.3086
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G416701_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-17152201155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GRMZM2G416701_P02 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201
                        78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-16152210IPR016177DNA-binding domain
PfamPF008472.0E-9152201IPR001471AP2/ERF domain
CDDcd000189.89E-12153211No hitNo description
PROSITE profilePS5103217.794153209IPR001471AP2/ERF domain
SMARTSM003802.0E-32153215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17153210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MELDLNVAEV APEKPSAALE ASDSGSSGSS VLNAEAASAG GGGPAPGEEG SSSTPAVLEF  60
SILRSDSDAA GADADDGDAT PSPPRHHQQQ LVTRELFPAP QHWAELGFFR AGPQQQPDIR  120
VLPHPHPYPP PPPPAQPQQA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYDDDMKQV HTRVFLQLAP TETSAERTRM  240
ALCTR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G416701
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G416701_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0841960.0BT084196.2 Zea mays full-length cDNA clone ZM_BFb0088B01 mRNA, complete cds.
GenBankBT0860860.0BT086086.2 Zea mays full-length cDNA clone ZM_BFc0114A11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648591.11e-157AP2-like ethylene-responsive transcription factor TOE3 isoform X1
RefseqXP_008648593.11e-158AP2-like ethylene-responsive transcription factor TOE3 isoform X3
RefseqXP_020394749.11e-157AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AXC33e-62AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1D6LGX51e-156A0A1D6LGX5_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
TrEMBLA0A1D6LGX61e-156A0A1D6LGX6_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G416701_P011e-157(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-31related to AP2.7